Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02406 ATGTTCCCTTACAGTTCAAACCCTTACCCTTCTTTTCTTCcctcatcttcatcttcttcactctTTCCTTTTCCATTTCTCAATCCTGAAAATGCTTCATCAAACACCACCAACAACAATAATACCCTTTTTCTTGATCCATTTTCCATTCCTTACATACCAACTCATCATCCTCATCCTCATCATCCCAACATTACAAATATTCCAGAAACCCTAAACAACTTAGCTGTTtcacaagaaaataataatagtaacaacaataataacattGCGGTTTCGATGCCTAAACAAGATCCTTCATCTCTTGGTGGTCCTAATTCTCATTATGGTATTTCTTGTTTCCTTACCAAGAAACCGGTTAAGAAAGACCGACATAGTAAGATTTATACTTCTCAAGGTTTGAGAGATCGAAGGGTTAGGCTTTCAATTGAGATCGCTCGAAAGTTCTTCGATCTTCAAGATATGCTAGGGTTTGACAAAGCTAGCAACACACTTGATTGGCTTTTCACAAAATCTAAGAAAGCAATTAAGGATCTAACTAAGAGTAagcaaaaacacaaaaatagtgAAGGTGGTGATGCTACTAAAAGCTTCTCATCTTCTTCGGATTGCGAAGATTCCGAAGTTGCTATTAATGATTCTTCAAACCTAGAGGGTGCAGGAAGTAAATTTGAAGAAAGGAAGTTGAAAAGGGTTCAAATCAAAGAACCAGCTAGTGTTAGAGCTAATAAGATGAAGGAATCAAGGGAAAAAGCAAGAGCAAGAGCAAGGGAAAGAACTAGCAACAAGATCTCCAACATAAGGGGGGTGCAAGAAGTAggattgaagaaaaaatatgaaaataatcttCAAGCTTTTCAACAATCAAGATCTTCACAAGATCATCAACTTGGGAGTAGTAGTGAAGGACCAAGAAATGATTTCAATGTTATTGAGGAATCAATTGTGATTAAGAGGAAGTTGAAACCTTCAATGATGGTTacacatcatcataatcataatcataatcataatcataatcataatcatcataACCATCAAAATCATGTTATCCCTAAGGAAGCTACAAGTTTCAACAATAATGGTGATTACCATTTTTTGCCTAATTCATCTCCAAATTGGGATGCTAATAATGGTACTTCATCCACTAATCGCTCAACCTTTTGTGCAATAGCTAGCATGAACCTTTCTACAGGGCTTCAAATCTTTGGAAAATCATGGGAGGAATGCACCAATCCACGTCTACATTAG 1251 0.3293 MFPYSSNPYPSFLPSSSSSSLFPFPFLNPENASSNTTNNNNTLFLDPFSIPYIPTHHPHPHHPNITNIPETLNNLAVSQENNNSNNNNNIAVSMPKQDPSSLGGPNSHYGISCFLTKKPVKKDRHSKIYTSQGLRDRRVRLSIEIARKFFDLQDMLGFDKASNTLDWLFTKSKKAIKDLTKSKQKHKNSEGGDATKSFSSSSDCEDSEVAINDSSNLEGAGSKFEERKLKRVQIKEPASVRANKMKESREKARARARERTSNKISNIRGVQEVGLKKKYENNLQAFQQSRSSQDHQLGSSSEGPRNDFNVIEESIVIKRKLKPSMMVTHHHNHNHNHNHNHNHHNHQNHVIPKEATSFNNNGDYHFLPNSSPNWDANNGTSSTNRSTFCAIASMNLSTGLQIFGKSWEECTNPRLH 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02406 416 ProSiteProfiles TCP domain profile. 121 179 IPR017887 -
Tsu06g02406 416 Pfam TCP family transcription factor 120 264 IPR017887 -
Tsu06g02406 416 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 4 415 IPR005333 GO:0003700
Tsu06g02406 416 PANTHER TRANSCRIPTION FACTOR TCP FAMILY-RELATED 4 415 - -
Tsu06g02406 416 MobiDBLite consensus disorder prediction 235 262 - -
Tsu06g02406 416 MobiDBLite consensus disorder prediction 286 308 - -
Tsu06g02406 416 MobiDBLite consensus disorder prediction 193 217 - -
Tsu06g02406 416 MobiDBLite consensus disorder prediction 235 269 - -
Tsu06g02406 416 ProSiteProfiles R domain profile. 246 263 IPR017888 -
Tsu06g02406 416 MobiDBLite consensus disorder prediction 286 307 - -
Tsu06g02406 416 MobiDBLite consensus disorder prediction 181 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02406 Tsu-Chr6 30487268 30489287 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02406 116 265 TCP Transcription Factor Family AT1G67260 45.000 3.44e-31 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu06g02406 TCP 1.3e-42 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02406 - - cam:101499957 489.574