Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02390 ATGGAGGTTGTGTGCAATCTTTTGAGAACTGTGATTCACGCTACGCCGGATGATCTATTGCCGGTTGTTTATCTCTTCTCATGCTGTATTGCTCCACCACATGAAGGGTTGGAATTTGGAATCGGAGAATCTACCGTTCTTGAGGTGGTCGCCGACGCTTATGGTATCGCTTTGGATCGCATTAAGGAGTGGAATAAGCAATCTGGAACAAACAGTCAAAAGAGGAAAAAAGATCGTATAAAGTCACTTTTTCTTGCTGCAACTGACTGTGAACCTGTATATCTAGTCCGGTTACTAAAGAAAGACTTGCAAATTCAATGTGCTGAACAAACTCTCTTGGCTGCATTGGGCCAAGCTGCAATGTACAATGAAGAAGATTCAAAACTGCCTCCTGAAGTTCAGTCTCCTCTAGAAGAGGCTGCAGATATTGTTAAACAAGCATATTCTGTATTTCCTGACTTTGACAAAATAGTATCTGCTCTTCTTACGGATGGTGTATGGTTACTTCCAAAGACATGTAAATTTACTCTTGGTGTTCCGGTTCATCCTATGTTGGCAAAACCAATTAACTGTGTATCTGATGCTCTAACTAAATTCAAGGGTATAGAGATTACCTGTGAATACAAATATGATGGCGAGCGTGCTCAGATACATTATTTGGAGAATGGCTTAGTTGAGATTTACAGTAGAAAGTCAGAACGGATCACCGGGAAGTTTCCAGACGTTGTTGCTGCTGTTTCcagattaaagaaaataattgtatCATCATTTGTCCTGGATTGTGAACTTGTTGCATATGATCGTGCAATGCATAAAATCCTTATTTTGCAGGAGCTTAGTACTCGGGCTCGCAAAGATGTAGGTACGAGTGACATAGAGGTTAATGTTTGCATATTTGCTTTTGATTTGTTGTATCTTAATGGACAAACACTTCTTCAAGAAAACCTGATAATCCGTAGAGAgCATCTCTATGCCTCTTTTGAGGAGGAATCTGAATTTCTTCAGTTTGcaacatcaataacatcaaATGATGCCGAGGAAATACAAAAGCTTTTTGACAAAGCTGTTGGTGCAAGTTGTGAAGGACTAGTTATTAAACCACTGAGTAACGGTGCTACATATGAAACTTCCCAGAAGTCACGCATCTGGCTAAAACTGAAGAAAGACTATCTAGATAGCAAGATAGGGGACACACTAGATTTTGTGCCTATTGGTGCTTACTATGGTTCTGGGAAACGTAAAGGAGTCTATGGTTCCTTTCACCTTGCTTGCTATGACAACGAAAGTGAAGAATTTCAAACTATTTGTAAAGTGGTGATTCTAAAACCAAAGGCAAAGTATCGATATAATGCAAAAGAAACCAAACCTGATGTCTGGTTCGAAGACTGTGAGGTGTTTGAGGTGAAAGCTTCAGACCTGACCTGTAGTTCTGAATATCCAGCTGCTATAGGCTTAGTAAATCCGGATAAGGGATCTCTTCGTGGTGCACGTCTAGTTGCGGTTCGTATTGACAAAGCCCCTAATCAAGGGCCACATCGTCTGAGCAGGTTGCGAAAATGTATAAAGCTcaagaacaaagaaaagaatcaaacaaacaaTCCAATATGA 1608 0.3899 MEVVCNLLRTVIHATPDDLLPVVYLFSCCIAPPHEGLEFGIGESTVLEVVADAYGIALDRIKEWNKQSGTNSQKRKKDRIKSLFLAATDCEPVYLVRLLKKDLQIQCAEQTLLAALGQAAMYNEEDSKLPPEVQSPLEEAADIVKQAYSVFPDFDKIVSALLTDGVWLLPKTCKFTLGVPVHPMLAKPINCVSDALTKFKGIEITCEYKYDGERAQIHYLENGLVEIYSRKSERITGKFPDVVAAVSRLKKIIVSSFVLDCELVAYDRAMHKILILQELSTRARKDVGTSDIEVNVCIFAFDLLYLNGQTLLQENLIIRREHLYASFEEESEFLQFATSITSNDAEEIQKLFDKAVGASCEGLVIKPLSNGATYETSQKSRIWLKLKKDYLDSKIGDTLDFVPIGAYYGSGKRKGVYGSFHLACYDNESEEFQTICKVVILKPKAKYRYNAKETKPDVWFEDCEVFEVKASDLTCSSEYPAAIGLVNPDKGSLRGARLVAVRIDKAPNQGPHRLSRLRKCIKLKNKEKNQTNNPI 535
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02390 535 ProSiteProfiles ATP-dependent DNA ligase family profile. 289 426 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu06g02390 535 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 2 174 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu06g02390 535 Pfam ATP dependent DNA ligase domain 183 387 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Tsu06g02390 535 ProSitePatterns ATP-dependent DNA ligase signature 2. 361 387 IPR016059 GO:0003909
Tsu06g02390 535 Pfam DNA ligase N terminus 2 64 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu06g02390 535 Pfam DNA ligase N terminus 58 116 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu06g02390 535 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 63 438 IPR000977 GO:0003910|GO:0005524|GO:0071897
Tsu06g02390 535 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 207 215 IPR016059 GO:0003909
Tsu06g02390 535 Gene3D - 1 65 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu06g02390 535 Gene3D - 66 182 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Tsu06g02390 535 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 177 387 - -
Tsu06g02390 535 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 2 63 - -
Tsu06g02390 535 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 60 510 - -
Tsu06g02390 535 PANTHER DNA LIGASE 1 2 63 - -
Tsu06g02390 535 SUPERFAMILY Nucleic acid-binding proteins 396 509 IPR012340 -
Tsu06g02390 535 PANTHER DNA LIGASE 1 60 510 - -
Tsu06g02390 535 Gene3D - 390 440 IPR012340 -
Tsu06g02390 535 Gene3D - 441 534 IPR012340 -
Tsu06g02390 535 CDD Adenylation_DNA_ligase_I_Euk 172 390 - -
Tsu06g02390 535 Gene3D DNA ligase/mRNA capping enzyme 183 389 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02390 Tsu-Chr6 30282355 30288575 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02390 2 510 Core DNA Replication Machinery Family AT1G08130 54.401 0.0 608
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02390 K10747 - gmx:100783155 643.269