Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02372 ATGGAAGAAGAATCTGTTGAACCAATTCTTCCTCAATCTCACGTTTGTAAGGTTGAAGGTATGGATCGGGTGGTTGTGACGGTTACTGGTTACCATGGATCTGAGAAATTCAACCTTATTAAGCTGATTTCGCATGCCGGTGCTAATTATGTTGGGGATATGTCGAAATCAATAACGCATCTGGTGTGTTGGAAGTTTGAAGGTAAGAAATATGACATTGCCCGGAAGTTAGGAAAGCCTATAGTCAACCACCGTTGGGTTGAAGACTGCATAAAGGAAGGAAGGCGTGTCCCAGAAGATTCTTATATTTTGCAAAGTGGACATGAAGTAGGGCCACTGATAATGGAGGTTCCAGTTACTTCCCAAGCAAATAGCTTGTCCAAAAATAAAGTGGTTAGTCGCAGGTCATGTGATATCAGGTCTGAAAGGCAAAATACTGAACTCAGTTCTGGGCTTTGTGAAATTTCTGTTTTGGAAGATTCTTGTTTATTGAAAAAGCACGGGGAGTCAAGTTCATATTCATCTATACTGTCAAGGAAAGGTAAAAGAAACTGTGGTAATGATGTTAGTACCACGGCTAGGCATTCTCGTAAAGGAAGAAGGGTTATGAAAAATGATGGTGAAGTGGAGTCGAGCCCCATAATTTTGGATTTAAGCACGGACAACCAGCTTTGTGAAATGAATAGGCTAAACGCTGAAGCTGCAGCTAACTCTACCCTGTCTAGCCATGTCAATATTGACAATATTCAAGAAAACAGTGAAGGGTTTGATGCTGGACTATCTAGTCAAACTAGAACTATCGGTGGAAGTTCAGTTGGCATTGACCAGAGCAGAAATTCAAATCATATATCTACTGTCAGAAGTTCAACTTTGCTTATAGAAGATCCCCTTCCTTTGACACAAACATCAGTAGATTTATGTTCCAGTTCTGCTGAAAAGTTGATGGATGCTGATGTGGTTGATAATTTTGATGACTTACCTACTTCAAATGAGTTGTCATGTGTTATATGTTGGACAGATTTTAGTTCAACAAGGGGGATTTTGGAGTGTGGACATCGGTTTTGTTATACATGCATCCAGGGTTGGGTTGCTTGCAAGAAAGCAGCGGGGAAAATTTCAAACTGTCCTTTGTGCAAGGCAATTATTACAAAGATCATGAAAGTTGAGCATGCAGCCACCACTGATCAAAAAGCATACTCCCAGACAATTCCACGTGATAACATAAGCTCAGATATTTTTATCCCCGTAGATCAAGAATTTCCGGACAATAACTTAGAGCCCTCACAGGCAGGTGCTTGTGTAATTTGCCGTGGTCGGGAACCTGAGGAGCTACTCGAGAATTGCGATGTTTGTCGATGTCGAAGAATTCATTCCTATTGCTTGGACCCTCCTTTACTGCCTTGGACATGCAGTTCCTGCAAGGAACTTCGAATGCTTTATCGTAACCGCTCATATTAG 1458 0.4129 MEEESVEPILPQSHVCKVEGMDRVVVTVTGYHGSEKFNLIKLISHAGANYVGDMSKSITHLVCWKFEGKKYDIARKLGKPIVNHRWVEDCIKEGRRVPEDSYILQSGHEVGPLIMEVPVTSQANSLSKNKVVSRRSCDIRSERQNTELSSGLCEISVLEDSCLLKKHGESSSYSSILSRKGKRNCGNDVSTTARHSRKGRRVMKNDGEVESSPIILDLSTDNQLCEMNRLNAEAAANSTLSSHVNIDNIQENSEGFDAGLSSQTRTIGGSSVGIDQSRNSNHISTVRSSTLLIEDPLPLTQTSVDLCSSSAEKLMDADVVDNFDDLPTSNELSCVICWTDFSSTRGILECGHRFCYTCIQGWVACKKAAGKISNCPLCKAIITKIMKVEHAATTDQKAYSQTIPRDNISSDIFIPVDQEFPDNNLEPSQAGACVICRGREPEELLENCDVCRCRRIHSYCLDPPLLPWTCSSCKELRMLYRNRSY 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02372 485 Pfam Ring finger domain 333 379 IPR001841 -
Tsu06g02372 485 SMART ring_2 334 378 IPR001841 -
Tsu06g02372 485 SMART BRCT_7 18 94 IPR001357 -
Tsu06g02372 485 ProSiteProfiles BRCT domain profile. 21 104 IPR001357 -
Tsu06g02372 485 ProSitePatterns Zinc finger RING-type signature. 350 359 IPR017907 -
Tsu06g02372 485 MobiDBLite consensus disorder prediction 184 206 - -
Tsu06g02372 485 SUPERFAMILY RING/U-box 321 386 - -
Tsu06g02372 485 SUPERFAMILY FYVE/PHD zinc finger 424 476 IPR011011 -
Tsu06g02372 485 SUPERFAMILY BRCT domain 20 105 IPR036420 -
Tsu06g02372 485 ProSiteProfiles Zinc finger RING-type profile. 334 379 IPR001841 -
Tsu06g02372 485 Gene3D BRCT domain 18 103 IPR036420 -
Tsu06g02372 485 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 320 406 IPR013083 -
Tsu06g02372 485 Pfam twin BRCT domain 24 86 IPR001357 -
Tsu06g02372 485 PANTHER F5A8.9 PROTEIN 18 166 - -
Tsu06g02372 485 PANTHER F5A8.9 PROTEIN 169 482 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02372 Tsu-Chr6 30083528 30089058 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02372 58 117 Core DNA Replication Machinery Family AT4G02110 47.541 8.51e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02372 - - cam:101495587 630.172