Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02348 ATGGAGAAGCTAAGAGTAGAAGAAGCTTTTCTATGTTTTGTGACATTCTTCTTGTTTTGGAGCTCTACAAATGCTTTGCTTTCTCCTAAGGGAATAAACTTTGAAGTGCAAGCTTTAATGAACATAAAAGGTTCTTTAGTTGATCCTCATGGAATTCTTGAAAATTGGGATGGTGATGCTGTTGATCCATGTAGTTGGAATATGGTTACTTGTTCCAATGAGAATTTTGTTGTTAGCTTGGGCATTCCTAGTCAGAATTTGTCTGGTACATTATCTCCAAGCATAGGAAACTTAACCAATCTTCAAACTGTAGTGTTACAGAATAACAACATAACTGGACCAATACCTTCAGAGCTAGGAAAACTTTCAATGCTTCAAACACTTGATCTTTCTGATAACTTCTTCAATGGAAAAATTCCTCCTTCTCTTGGTTATCTGAGAAACCTTCAGTACTTGAGGCTTAATAATAACAGTTTTTCTGGTGAATGTCCCGAGTCACTTGCTAACATGGCACAACTTACTTTCCTTGACTTATCATTCAACAATCTTAGTGGCTCTGTGCCTAGAATTTTGGCCAAATCATTCAgTATTGTTGGAAACCCTCTGGTGTGTGCTATAGGAAAAGAAACAAACTGCCATGGGATGAAACTCATGCCTATGTCAATGAACTTAAACAATACTAACTATGCATTATCATCAAGGAGGAAAAGAGCTCACAAAATGGCCATTGTCTTTGGTTTGAGTCTTGGATGCCTTTGCTTGTTAGTCCTTGGCTTCGGATTGGTACTATGGAGAAGACACAAGCATAATCGACAAGCATTCTTTGATGTTAAAGACCGACATCACGAAGAAGTCTACCTAGGAAATTTGAAGAGCTTCCAATTAAGAGAACTTCAGATTGCTACTCACAACTTCAGCAACAAAAACATATTAGGAAAAGGTGGTTTCGGTGATGTCTACAAAGGAATTCTTTCGGATGGAACACTTGTGGCCGTAAAGAGACTTAAAGATGGCAATATCAGTGGAGGAGAGATACAATTTCAAACTGAAGTTGAAATGATCAGTTTGGCAGTGCACAGAAACCTTCTCAAATTGTATGGATTTTGTATGACAACATCAGAAAGGCTTTTAGTTTACCCCTACATGTCCAATGGCAGTGTCGCTTCGCGTCTCAAGGCTAAGCCAGTGTTGGATTGGGGCACAAGGAAGCAAATTGCATTAGGAGCAGGAAGAGGACTATTATACCTTCATGAGCAATGTGATCCAAAGATAATCCATAGAGATGTAAAAGCTGCAAATATATTACTTGATGATTATTGTGAAGCAGTAGTTGGAGATTTTGGTTTGGCAAAGCTTTTAGACCACAAAGATTCACATGTAACAACTGCAGTTAGGGGAACAGTAGGACATATAGCACCTGAGTATCTTTCCACAGGACAATCTTCTGAAAAGACTGATGTTTTTGGATTTGGCATTTTGCTTCTTGAGTTGATCACTGGTTTAAGGGCTTTAGAATTCGGCAAAGCAGCTAACCAAAAAGGAGCTATGCTTGATTGGGTAAAGAAAATTCATCAAGAGAAGAAGCTAGATTTACTTGTAGACAAGGATCTCAAGAACAATTATGACAAGATTGAGCTTGAAGAAATAGTTCAAGTTGCACTTTTATGTACACAATACCTTCCAGGCCACAGACCGAAAATGTCCGAAGTTGTACGCATGCTCGAAGGTGACGGTCTAGCTGAGAAATGGGAAGCTTCTCAACGGGCCGACAACTCTACCAAGTGCAAACCACATGAGTTATCTTCGTCCGATCGGTATTCCGATCTTACCGATGATTCTTCTTTGTTAATCCAAGCCATGGAGCTTTCAGGTCCAAGGTGA 1881 0.3923 MEKLRVEEAFLCFVTFFLFWSSTNALLSPKGINFEVQALMNIKGSLVDPHGILENWDGDAVDPCSWNMVTCSNENFVVSLGIPSQNLSGTLSPSIGNLTNLQTVVLQNNNITGPIPSELGKLSMLQTLDLSDNFFNGKIPPSLGYLRNLQYLRLNNNSFSGECPESLANMAQLTFLDLSFNNLSGSVPRILAKSFSIVGNPLVCAIGKETNCHGMKLMPMSMNLNNTNYALSSRRKRAHKMAIVFGLSLGCLCLLVLGFGLVLWRRHKHNRQAFFDVKDRHHEEVYLGNLKSFQLRELQIATHNFSNKNILGKGGFGDVYKGILSDGTLVAVKRLKDGNISGGEIQFQTEVEMISLAVHRNLLKLYGFCMTTSERLLVYPYMSNGSVASRLKAKPVLDWGTRKQIALGAGRGLLYLHEQCDPKIIHRDVKAANILLDDYCEAVVGDFGLAKLLDHKDSHVTTAVRGTVGHIAPEYLSTGQSSEKTDVFGFGILLLELITGLRALEFGKAANQKGAMLDWVKKIHQEKKLDLLVDKDLKNNYDKIELEEIVQVALLCTQYLPGHRPKMSEVVRMLEGDGLAEKWEASQRADNSTKCKPHELSSSDRYSDLTDDSSLLIQAMELSGPR 626
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02348 626 Pfam Protein kinase domain 306 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02348 626 MobiDBLite consensus disorder prediction 585 608 - -
Tsu06g02348 626 Pfam Leucine Rich Repeat 125 144 IPR001611 GO:0005515
Tsu06g02348 626 ProSiteProfiles Protein kinase domain profile. 305 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02348 626 Pfam Leucine rich repeat N-terminal domain 35 72 IPR013210 -
Tsu06g02348 626 ProSitePatterns Serine/Threonine protein kinases active-site signature. 424 436 IPR008271 GO:0004672|GO:0006468
Tsu06g02348 626 PANTHER PROTEIN NSP-INTERACTING KINASE 1-LIKE ISOFORM X1 6 626 - -
Tsu06g02348 626 PANTHER SOMATIC EMBRYOGENESIS RECEPTOR KINASE 1 6 626 - -
Tsu06g02348 626 Gene3D Transferase(Phosphotransferase) domain 1 382 594 - -
Tsu06g02348 626 SMART LRR_typ_2 170 193 IPR003591 -
Tsu06g02348 626 SMART LRR_typ_2 146 169 IPR003591 -
Tsu06g02348 626 SMART LRR_typ_2 98 122 IPR003591 -
Tsu06g02348 626 SUPERFAMILY Protein kinase-like (PK-like) 282 575 IPR011009 -
Tsu06g02348 626 Gene3D Phosphorylase Kinase; domain 1 274 381 - -
Tsu06g02348 626 Gene3D Ribonuclease Inhibitor 32 214 IPR032675 -
Tsu06g02348 626 ProSitePatterns Protein kinases ATP-binding region signature. 311 333 IPR017441 GO:0005524
Tsu06g02348 626 SMART serkin_6 305 574 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02348 626 MobiDBLite consensus disorder prediction 585 606 - -
Tsu06g02348 626 SUPERFAMILY L domain-like 35 204 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02348 Tsu-Chr6 29791753 29797023 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02348 4 626 Receptor kinase-like Gene Family AT5G16000 75.714 0.0 981
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-II Tsu06g02348 Pkinase 1.7e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02348 - - gmx:100806650 1066.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02348 06 29791753 29797023 Tsu06g02348 06 29791753 29797023 ECH
Tsu06g02348 06 29791753 29797023 Tsu04g00338 04 3118337 3122867 PCT