Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02331 ATGAAGGTGACAAAGTTTTGGCTTGGTCTAGAGCCTTTGGAAGATGATTCATATTCAAATGTTGATCCATTTGTTCTTCAATTGACCAAAGAAGGAGTCGCTCTTAATACAACTGGCGGTGTTCAAGAATCTAAATCAGGTTTCGATTCAAAATTAGAGTTTTCCTGTAGTCCAACTGAAAAGACAATATTATCTTGGGCTGTTTTGGAATTGAATATGGATATGGagaatttgtcaaaaaattgttCTATTATTCAAGTTGAGACATTCAActcaaagaagaaaagaagcGGCGTATTAATGAGAAGAAATTTCGACAACAAAATTAATGCACATTGGAAAGGAGTAGCAGAGATGGTATTAAGAATGTGTTCAAGATACTATGATGGTTATAGAAATGTGAAAGATCTCGACAATGAAACTATGTCGAAATTTGAAAGCATTATTCAAGGTATGACAGCTAGTAGTTTTCGTTGTATTGCTTTAGCGTACACAGAAGTCGTAGACGAAAAGCTAGTAGGTGAAGGAGGCAACAATAAGATGGTGGTAAAAGATAGTTGCTTAACATTGTTAGGACTTGTTGGTATTAAGGATCGATGTCGCCCAGGGGTGAAAACGGCGGTGGAAGCTTGCCAACATGCCGGTGTGAATGTCAAAATGATTACAGGTGACAATGTTTTCACTGCAAAAGCCATAGCATTCGAATGTGGAATTCTTCAACCTAATCAAGACACAAACGAAACTGTGGTCGGAGGCCAACAATTTTGCAACTTCACGCACGAAGAGAGGTTAGAGAAAGTTGACAAAATCTCTGTAATGGCAAGATCTTCTCCTTTTGACAAACTTCTAATGGTGCAATGCTTAAAGCAAAAAGGACATGTTGTTGCCGTTACCGGAGATGGAACAAACGATGCACCTGCATTGAAAGAAGCTGATATTGGTCTTTCAATGGGAATTCAAGGTACTGATGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAATTGGGGAAGATGTGTTTACAACAACATTcaaaaattcattcaatttCAACTAACAGTGAATGTAGCTGCACTTGTTATCAATTTTGTCGCGGCGGTTTCAGCAGGTGAAGTTCCTTTAACAGCAGTTCAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCTTTGACTCTTGCAACTGAAAAACCTACTAAGGAATTAATGGATCAAAAACCTGTTGGTAGAACAAAACCTCTTATAACTAACATTATGTGGAGGAATCTTTTGTCACAAGCTTTCTACCAAATAGTAATTTTGTTAACCCTTCAATTCAAAGGTGAAACTATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATTTTCAATACATTTGTTCTTTGTCAAGTGTTTAACGAGTTTAATGCAAGGAAGTTGGAGAAGAAGAATGTGTTTGAAGGAATACTTAAGAGTAAGTTGTTTTTGGGAATTGTTGGTGTGACATTGGTGCTTCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTACTGATACTGAGAGATTGAATTGGAGAGAATGGATTATTTGTATTGGTCTTGGTGCTGTTTCTTGGCCAATTGGTTTTGTTGTAAAGTTGATACCTGTCTCAGATAAACCATTACTTGATTTTTTGAGTATGAAAAAGACTTGA 1710 0.352 MKVTKFWLGLEPLEDDSYSNVDPFVLQLTKEGVALNTTGGVQESKSGFDSKLEFSCSPTEKTILSWAVLELNMDMENLSKNCSIIQVETFNSKKKRSGVLMRRNFDNKINAHWKGVAEMVLRMCSRYYDGYRNVKDLDNETMSKFESIIQGMTASSFRCIALAYTEVVDEKLVGEGGNNKMVVKDSCLTLLGLVGIKDRCRPGVKTAVEACQHAGVNVKMITGDNVFTAKAIAFECGILQPNQDTNETVVGGQQFCNFTHEERLEKVDKISVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTDVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALTLATEKPTKELMDQKPVGRTKPLITNIMWRNLLSQAFYQIVILLTLQFKGETIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGILKSKLFLGIVGVTLVLQVVMVEFLKKFTDTERLNWREWIICIGLGAVSWPIGFVVKLIPVSDKPLLDFLSMKKT 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02331 569 Gene3D - 344 551 - -
Tsu06g02331 569 PRINTS H+-transporting ATPase (proton pump) signature 298 314 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g02331 569 PRINTS H+-transporting ATPase (proton pump) signature 145 163 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g02331 569 PRINTS H+-transporting ATPase (proton pump) signature 330 355 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g02331 569 PANTHER CALCIUM-TRANSPORTING ATPASE 1 542 - -
Tsu06g02331 569 PRINTS P-type cation-transporting ATPase superfamily signature 322 334 - -
Tsu06g02331 569 PRINTS P-type cation-transporting ATPase superfamily signature 192 203 - -
Tsu06g02331 569 PRINTS P-type cation-transporting ATPase superfamily signature 214 224 - -
Tsu06g02331 569 PRINTS P-type cation-transporting ATPase superfamily signature 298 317 - -
Tsu06g02331 569 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 269 379 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g02331 569 Pfam haloacid dehalogenase-like hydrolase 189 312 - -
Tsu06g02331 569 Gene3D - 200 343 IPR023214 -
Tsu06g02331 569 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 49 555 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Tsu06g02331 569 Pfam Cation transport ATPase (P-type) 53 126 - -
Tsu06g02331 569 PANTHER CATION TRANSPORTING ATPASE 1 542 - -
Tsu06g02331 569 Pfam Cation transporting ATPase, C-terminus 383 553 IPR006068 -
Tsu06g02331 569 Gene3D - 75 199 IPR023299 GO:0000166
Tsu06g02331 569 SUPERFAMILY HAD-like 189 402 IPR036412 -
Tsu06g02331 569 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 1 204 IPR023299 GO:0000166
Tsu06g02331 569 SUPERFAMILY Calcium ATPase, transmembrane domain M 348 555 IPR023298 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02331 Tsu-Chr6 29504569 29506385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02331 1 564 Primary Pumps ATPases AT3G63380 66.903 0.0 773
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02331 K01537 - gmx:100793918 892.108