Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02320 ATGTCAATGACCTTCTTGACAAACATGAACCACATTGAGACACTTCTCAATGCACCAAAAACAAATAGCACATACAACAAAAGGTGGCACAATGCTTTCATGAAAATCTATTGTTCTAGAGCTTTCATGTTACATTTCACCAACAAATCCAACAAACCAAAAATTGCACCTACCTCTTCTTTCACcgtggttgatttgaattcatcTCATTCTTATACCATTGATCAAGATACTCTCATATATATTGTCAAAGAGAAAAACATTGAAACCCTTCAAAACCATGGTGGAGTTGAAGCTATTGCTTCAAATCTTAAAACCAACATTGAGTTTGGTATCAAAAGTGATGATTTTGAAGACATTGCAATTAGAAAAGAAGTGTTTGGTTCCAACACTTACAAAAAACCACCTTCTAAAAGTTTCTTTTATTTCATTGTTGAAGCTTTTAAGGATGTAACAATTCTAATCCTTTTGGTTTGTGCTACTCTTTCACTTGCCTTTGGAATCAAGGAACATGGAATCAAAGAAGGTTGGTATGATGGTGGTAGCATTTTTCTAGCTGTTTTCATTGTTATTTCAATGTCTTCAATAAGCAActtcaaacaaaacaaacaatttgataaattgTCTCAAGTGAGCAATGACATTCAGATTGATCTGGTTCGTAGTGGGCGCCGACAAAAGGTATCAATCTTTGACATTGTTGTTGGTGATGTTGTTTGTTTGAAGATTGGTGATCAAGTACCGGCTGATGGATTATTTATAGATGGACATTCATTGAGAGTCGATGAATCAAGCATGACCGGTGAGAGCGATCATGTAGAGATTAACAAAGACCATCATCCATTTTTGTTTTCCGGAACAAAAGTTGCTGATGGTTATGCAAAAATGCTTGTTACATCGGTTGGTATGAACACAACTTGGGGACAAATGATGAGTTCAATAAGCAATGATATCAACGAAGAAACACCTTTGCAAACAAGGTTGAATAAGCTAACATCATCGATCGGAAAGGTTGGTTTGGTTGTGgcatttttagtccttattgttttgttgattcGATATTTCACCGGAAACACAAAGACTGATAACGGCGTTAGAGAGTTCAACGGAAGAAAGACTAGTTTTGATGATGTGATGAATGCAATTATTGGAATTATTGCTGATGCTGTTactattgttgttgttgctatACCTGAGGGTTTGCCATTAGCTGTGACATTGACACTTGCTTATTCAATGAAGAAAATGATGGCTGATCAAGCTATGGTTAGAAAACTGTCTGCTTGTGAAACAATGGGATCTGCTACTATTATCTGCACTGACAAAACAGGTACACTCACTTTGAATGAGATGAAGGTGACAAAGTTTTGGCTTGGTCTAGAGCCTTTGGAAGATGATGCATATTCAAATGTTGATCCATTTGTTCTTCAATTGATCAAAGAAGGAGTCGCTCTTAATACCACCGGCGGTGTTCACGAATCTAAATCAGGTTCTGATTCAAAATTCGAGTTTTCCGGTAGTCCAACTGAAAAGGCAATATTATCTTGGGCTGTTTTGGAATTGAATATGGATATGGAGAATTTGTCAAAAAGTTGTTCTATTATTCAAGTTGAGACATTCAActcaaagaagaaaagaagcGGCGTATTAATGAGAAGAAATGTCGACAACAAAATTAATGCACATTGGAAAGGGGCAGCAGAGATGGTATTAAGAATGTGTTCAAGATACTATGATGGTTATGGAAATGTGAAAGATCTTGACAATGAAACCATGTCGAAATTTGAAAGCATTATTCAAGGTATGGCAGCTAGTAGTCTTCGTTGTATCGCTTTAGCGTACGCAGAAGTTGCAGACGAAGAGCTAGGAGGTGAAGGAGAAAACAACAAGATAGTGGTAAAAGATAGTGGTTTAACATTGTTAGGACTTGTTGGTATTAAGGATCCGTGTCGCCCAGGGGTGAAAGCGGCGGTGGAAGCTTGCCAACATGCCGGCGTGGATGTTAAAATGATTACAGGTGACAATATATTCACTGCAAAAGCCATAGCATTCGAATGTGGAATTCTTCGACCTAATCAAGACACAAACGAAACTGTGGTCGAAGGCGAACAATTTCGCAACTTCACGCACGAAGAGAGGTTAGAGAAAGTTGACAAAATATCTGTAATGGCAAGATCTTCTCCTTTTGACAAACTTCTAATGGTGCAATGCTTAAAGCAAAAAGGACATGTTGTTGCCGTTACCGGAGATGGAACAAACGATGCACCTGCATTGAAAGAAGCTGATATTGGTCTTTCAATGGGAATTCAAGGTACAGAAGTTGCAAAAGAGAGTTCAGATATTGTTATATTAGATGACAATTTTGCATCTATAGTAACAGTTTTAAATTGGGGAAGATGTGTTTACAACAACATTcaaaaattcattcaatttCAACTAACAGTGAATGTAGCTGCACTTGTTATCAATTTTGTCGCGGCGGTTTCAGCAGGTGAAGTTCCTTTAACAGCAGTTCAATTATTATGGGTGAATTTGATTATGGATACATTAGGTGCTTTGGCTCTTGCAACTGAAAAACCTACTAAGGAATTAATGGATCAAAAACCTGTTGGTAGAACAAAACCTCTTATTACTAACATTATGTGGAGGAATCTTTTGTCACAAGCTTTCTACCAAATAGTAATTTTGTTAACCCTTCAATTCAAAGGTGAAACTATTTTTGGTGTGACATCAAAGGTAAATGACACATTGATTTTCAATACATTTGTTCTTTGTCAAGTGTTTAACGAGTTTAATGCAAGGAAGTTGGAGAAGAAGAATGTGTTTGAAGGAATACTTAAGAGTAAGTTGTTTTTGGGAATTGTTGGTGTGACATTGGTGCTTCAAGTTGTGATGGTTGAGTTTTTGAAGAAGTTTGCTGATACTGAGAGATTGAATTGGAGAGAATGGATTATTTGTATTGGTCTTGGTGCTGTTTCTTGGCCAATTGGTTTTGTTGTGAAGTTGATACCTGTCTCAGATAAACCATTACTTGATTTTTTGAGTATGAAAAAGACTTGA 3060 0.3539 MSMTFLTNMNHIETLLNAPKTNSTYNKRWHNAFMKIYCSRAFMLHFTNKSNKPKIAPTSSFTVVDLNSSHSYTIDQDTLIYIVKEKNIETLQNHGGVEAIASNLKTNIEFGIKSDDFEDIAIRKEVFGSNTYKKPPSKSFFYFIVEAFKDVTILILLVCATLSLAFGIKEHGIKEGWYDGGSIFLAVFIVISMSSISNFKQNKQFDKLSQVSNDIQIDLVRSGRRQKVSIFDIVVGDVVCLKIGDQVPADGLFIDGHSLRVDESSMTGESDHVEINKDHHPFLFSGTKVADGYAKMLVTSVGMNTTWGQMMSSISNDINEETPLQTRLNKLTSSIGKVGLVVAFLVLIVLLIRYFTGNTKTDNGVREFNGRKTSFDDVMNAIIGIIADAVTIVVVAIPEGLPLAVTLTLAYSMKKMMADQAMVRKLSACETMGSATIICTDKTGTLTLNEMKVTKFWLGLEPLEDDAYSNVDPFVLQLIKEGVALNTTGGVHESKSGSDSKFEFSGSPTEKAILSWAVLELNMDMENLSKSCSIIQVETFNSKKKRSGVLMRRNVDNKINAHWKGAAEMVLRMCSRYYDGYGNVKDLDNETMSKFESIIQGMAASSLRCIALAYAEVADEELGGEGENNKIVVKDSGLTLLGLVGIKDPCRPGVKAAVEACQHAGVDVKMITGDNIFTAKAIAFECGILRPNQDTNETVVEGEQFRNFTHEERLEKVDKISVMARSSPFDKLLMVQCLKQKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFASIVTVLNWGRCVYNNIQKFIQFQLTVNVAALVINFVAAVSAGEVPLTAVQLLWVNLIMDTLGALALATEKPTKELMDQKPVGRTKPLITNIMWRNLLSQAFYQIVILLTLQFKGETIFGVTSKVNDTLIFNTFVLCQVFNEFNARKLEKKNVFEGILKSKLFLGIVGVTLVLQVVMVEFLKKFADTERLNWREWIICIGLGAVSWPIGFVVKLIPVSDKPLLDFLSMKKT 1019
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02320 1019 SUPERFAMILY Calcium ATPase, transmembrane domain M 95 1005 IPR023298 -
Tsu06g02320 1019 ProSitePatterns E1-E2 ATPases phosphorylation site. 441 447 IPR018303 -
Tsu06g02320 1019 SFLD p-type atpase 421 801 IPR044492 -
Tsu06g02320 1019 PRINTS P-type cation-transporting ATPase superfamily signature 772 784 - -
Tsu06g02320 1019 PRINTS P-type cation-transporting ATPase superfamily signature 748 767 - -
Tsu06g02320 1019 PRINTS P-type cation-transporting ATPase superfamily signature 262 276 - -
Tsu06g02320 1019 PRINTS P-type cation-transporting ATPase superfamily signature 664 674 - -
Tsu06g02320 1019 PRINTS P-type cation-transporting ATPase superfamily signature 439 453 - -
Tsu06g02320 1019 PRINTS P-type cation-transporting ATPase superfamily signature 642 653 - -
Tsu06g02320 1019 PANTHER CALCIUM-TRANSPORTING ATPASE 10 992 - -
Tsu06g02320 1019 Pfam haloacid dehalogenase-like hydrolase 437 762 - -
Tsu06g02320 1019 SUPERFAMILY HAD-like 437 853 IPR036412 -
Tsu06g02320 1019 PRINTS H+-transporting ATPase (proton pump) signature 780 805 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g02320 1019 PRINTS H+-transporting ATPase (proton pump) signature 595 613 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g02320 1019 PRINTS H+-transporting ATPase (proton pump) signature 748 764 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g02320 1019 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 446 646 IPR023299 GO:0000166
Tsu06g02320 1019 PANTHER CATION TRANSPORTING ATPASE 10 992 - -
Tsu06g02320 1019 Gene3D - 146 1000 - -
Tsu06g02320 1019 Gene3D - 449 649 IPR023299 GO:0000166
Tsu06g02320 1019 SMART Cation_ATPase_N_a_2 93 168 IPR004014 -
Tsu06g02320 1019 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 85 1005 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Tsu06g02320 1019 Gene3D - 119 315 - -
Tsu06g02320 1019 CDD P-type_ATPase_Ca_PMCA-like 123 881 - -
Tsu06g02320 1019 SFLD Haloacid Dehalogenase 421 801 - -
Tsu06g02320 1019 Pfam Cation transporter/ATPase, N-terminus 94 163 IPR004014 -
Tsu06g02320 1019 Pfam Cation transporting ATPase, C-terminus 833 1003 IPR006068 -
Tsu06g02320 1019 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 382 461 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g02320 1019 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 719 829 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Tsu06g02320 1019 SUPERFAMILY Calcium ATPase, transduction domain A 217 313 IPR008250 -
Tsu06g02320 1019 Pfam E1-E2 ATPase 216 417 - -
Tsu06g02320 1019 Gene3D - 436 793 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02320 Tsu-Chr6 29413438 29418113 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02320 12 1018 Primary Pumps ATPases AT3G22910 67.291 0.0 1303
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02320 K01537 - gmx:100793918 1610.51