Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02313 ATGTCTCGTTATCCTTCTTCAAATCCTTTCGCAACGATTCACTCAGATTCCGATTCTGATACCGAATCACTGAGTCAATTCGTCACAGATCTATTCGAAAATCGTTCCCCTTCCGATCCAGCTTGTCCTTGGGAAGATGAAGATGATCCAATATACCTAAACCCTTTCTCTGTTCTCGCTTGCGATATTGATCAAGCTGTATCTCAACCACAACCAgaattagggttagggttagaaTTAGGGTTTGGTGATGAATATGAAAACGAAATTGATGATACTCAATATAATGATAATTATGATCAAGTTTTTGATTTTTCAGTGGGTGGTGTTGATGATGTTTCTAGTGGGCTTAGGGTTGTTGAATTTGGTACTGATTCGGAATCGAGTGGgaatgatgaagaatttgattATAGAGGAGAGAATGATGATAGTGATGAGAGGGTTGGTGGAATTTGTTGGGATAGTCTTTGTTTGGAGGATCATAGGAGTATTTTGAATGATTGGGAGGAAGTGGTAGAGGAGAGGGCGAATGAGGATGCTAATGAGATTGGAGATTCTTCTAGTTTGTTGATTGATGATGAggttgatgttgatgttgatcgGTCAGTGGCATCGGGgtttgaagaggaagaagaggaacCGGGCGAAGAGGCGTTGAGGTATTTAGAGTGGGAGATTCTATTGGCTTTTAATAATTTAGAGAGGAGTGGTggattggaacatgaagatgaGAGTCTTAATAATTTGTATTTAGCTGTTCACGAAAGTATTATATCGGGAAACAATGATTATGATGTTCTTTTTGGACAGTTAATGGAGAATGAGAGTGGTTTGAAGGGTAGTCCACCGGCGGCGAAGAGTTTCGTGGAGAATCTTCCTTTGGTGGAATTGACAAAGGAGGAGTTGAAAAAGAATGATGTTGTGTGTGCTGTTTGTAAAGATGAGGTAATGGTGGAAGAGAAGGTGAGGAAGCTACCTTGTTCACATTGTTACCATGGAGATTGTATTTTGCCGTGGTTGAGTATTCGCAACACGTGTCCTGTTTGTCGGTTCGAGTTGCCAACGGATGATGCTGATTACGAGCAGAGCAAGATTCGTAGTGTTGCTCGTGATCTGTTGGAGTTTGCATCATAG 1134 0.3757 MSRYPSSNPFATIHSDSDSDTESLSQFVTDLFENRSPSDPACPWEDEDDPIYLNPFSVLACDIDQAVSQPQPELGLGLELGFGDEYENEIDDTQYNDNYDQVFDFSVGGVDDVSSGLRVVEFGTDSESSGNDEEFDYRGENDDSDERVGGICWDSLCLEDHRSILNDWEEVVEERANEDANEIGDSSSLLIDDEVDVDVDRSVASGFEEEEEEPGEEALRYLEWEILLAFNNLERSGGLEHEDESLNNLYLAVHESIISGNNDYDVLFGQLMENESGLKGSPPAAKSFVENLPLVELTKEELKKNDVVCAVCKDEVMVEEKVRKLPCSHCYHGDCILPWLSIRNTCPVCRFELPTDDADYEQSKIRSVARDLLEFAS 377
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02313 377 MobiDBLite consensus disorder prediction 123 142 - -
Tsu06g02313 377 Pfam Ring finger domain 309 350 IPR001841 -
Tsu06g02313 377 PANTHER RING FINGER AND PROTEASE ASSOCIATED DOMAIN-CONTAINING 2 376 - -
Tsu06g02313 377 ProSiteProfiles Zinc finger RING-type profile. 309 350 IPR001841 -
Tsu06g02313 377 SUPERFAMILY RING/U-box 297 356 - -
Tsu06g02313 377 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 271 356 IPR013083 -
Tsu06g02313 377 CDD RING-H2_RNF126_like 309 350 - -
Tsu06g02313 377 PANTHER ZINC FINGER, C3HC4 TYPE (RING FINGER) PROTEIN 2 376 - -
Tsu06g02313 377 MobiDBLite consensus disorder prediction 1 22 - -
Tsu06g02313 377 SMART ring_2 309 349 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02313 Tsu-Chr6 29361847 29363876 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02313 224 364 C3H Transcription Factor Family AT3G02340 52.318 3.04e-48 166
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02313 - - gmx:100812037 338.961
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02313 06 29361847 29363876 Tsu06g02313 06 29361847 29363876 ECH