Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02312 atggattTGATGATTGGTAATGGTAATCTTTTTTCAAACATTGTACAAATTGATTCTGACAAAGCAAGTTGGAATGTAAAAGCCAAAATTATAAGACTATGGGAAGTTTCTGATTTCAATCGTAATAACAATCCTTTTTCTATTGAGATGGTGTTAATGGACTGTGACGGTGGAAGAATTCATGCAACGATTAAAAAAACCCTCATTTACAAATTTAAGGATGATTTGGTTCAAGGAAAAGtttttagttttgaaaattTGGGTGTTTCTACAAATGGTGGTGCTTATCGCACTACTCACCATAGGTATAAGTTAAATTTTCAGTTTTCATCTGTGGTTCAGAGGCTTGCTGGCCATGATGTTGTCAAGTCTCCATTTCATTTAGTCCCTATTGCTGATGTTATTGGTGGTTCATATGACACTAATTATTTAGTCGatgtCATCGGTGTTTTGACTGGGGTAGGTTCTGAACGTGAAATAACAAACCAAAATGGGACAACCACTAAGCTTAATGTGATTGCTTTGGAAGCTGATGAGCACAAGATTCAGTGCACATTGTTTGGTCCTTATGTTGATGAACTTAACACTTTTATTGCTGCTGGTGACTATAACAATGCTGTAGTGATTGTCCAACTGGCAAAGGCTAAGACATTTCAAGACAAGATCCACATACAAAACTGCATGAATTGTACCCGGTTGTTCTTTAATCCAAACTGCCCTGAAAGTACAGAATCTCGGAATATTGTATTTGCTACTGTCAAAAGGGTTATGAACCTAGATTGCTATTGGTATACTGCCTGTGTATGTAACAAATTTGTTgatggtggtggtggaggagtCCCACCTCATATTGCAATGTTGGTGGATAAGACGTGGTTATTCAAGgAGGCTGGATCTTTAAGTACTTTGTTGGATAAAGGAAAGGATGTTTTAGCAAGTGCTTCTACCAATATCTTATCAGAGGATTTAATTTCATTGACTGGAAGTAGTAGCAAAGCAAAAGGAAAAGAGATTGTTAGTGGTAGTACTGCTGTTGAAGTAAGTCGCGatttattgaacaaattttcTGATACTGTCGTCAACCTTGCTGATGATTCTCTTGGTACTCAAGAGATAGAGGAAGATATTTATTCTAAGGTTTCACATTCATTGAAAGAAAAGGGCAAAGAGATTGTTGTTGAGGGTACACCTGTTGGAAATATTGATCAAGTAATGAGAAAAGATGAAACTGTAGTCACTACTATTGCTGGTGAATCTGCCAAGTCTGGTCTGTCTGTTATAACTCAAAATGAAACTGCTGCAATTCATGGAAAGGGAGCAAAGTCCATGAAGGATATTTTGGAATTGTCTGGTGTTGTTGATCTTGATAATGACTGTGTTCAAACTCAGCAAGATGATGTAACTCCAAACCAACTTGCTGCTAAGGAAACAAAAGGATCTAGGAGCAAGAAGTATGTGAAGAGAGTTTCTCCTCAAAAGGAAGATGAGGATGAGAATGCACCAATCAAACTTTTGAAAAGGGCTATCAAAATTGAGAAGATTGTTTAG 1548 0.3559 MDLMIGNGNLFSNIVQIDSDKASWNVKAKIIRLWEVSDFNRNNNPFSIEMVLMDCDGGRIHATIKKTLIYKFKDDLVQGKVFSFENLGVSTNGGAYRTTHHRYKLNFQFSSVVQRLAGHDVVKSPFHLVPIADVIGGSYDTNYLVDVIGVLTGVGSEREITNQNGTTTKLNVIALEADEHKIQCTLFGPYVDELNTFIAAGDYNNAVVIVQLAKAKTFQDKIHIQNCMNCTRLFFNPNCPESTESRNIVFATVKRVMNLDCYWYTACVCNKFVDGGGGGVPPHIAMLVDKTWLFKEAGSLSTLLDKGKDVLASASTNILSEDLISLTGSSSKAKGKEIVSGSTAVEVSRDLLNKFSDTVVNLADDSLGTQEIEEDIYSKVSHSLKEKGKEIVVEGTPVGNIDQVMRKDETVVTTIAGESAKSGLSVITQNETAAIHGKGAKSMKDILELSGVVDLDNDCVQTQQDDVTPNQLAAKETKGSRSKKYVKRVSPQKEDEDENAPIKLLKRAIKIEKIV 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02312 515 Pfam Domain of unknown function DUF223 49 144 IPR003871 -
Tsu06g02312 515 MobiDBLite consensus disorder prediction 464 499 - -
Tsu06g02312 515 Gene3D - 120 254 IPR012340 -
Tsu06g02312 515 Gene3D - 10 115 IPR012340 -
Tsu06g02312 515 PANTHER REPLICATION FACTOR A 1, RFA1 28 245 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu06g02312 515 CDD RPA1_DBD_B_like 146 241 - -
Tsu06g02312 515 CDD RPA1_DBD_A_like 26 113 - -
Tsu06g02312 515 SUPERFAMILY Nucleic acid-binding proteins 12 115 IPR012340 -
Tsu06g02312 515 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 28 245 - -
Tsu06g02312 515 SUPERFAMILY Nucleic acid-binding proteins 126 248 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02312 Tsu-Chr6 29334734 29337838 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02312 14 246 Core DNA Replication Machinery Family AT2G06510 23.868 1.49e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02312 - - mtr:MTR_4g036240 348.206