Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02292 ATGGGTTctgtttgttgttgtttgagctttgatgattttgaagatTATGCAAATCCAAATAATCCTGTGTATAGGAACTGTGTGTGTTTCAGTTGCTTGCTACAGAATCTTTTGAATGTGTATTCATCAATATTCCGTAGAGGGGAAGCACATTCAATTCCTTCATCTCTTCAGGGAACAGCATCCATGACTTCTGCAGGATCGCTTGATAATTCTCTATCAGACATGTACCGTTCTCCACCAAGGCCCTTACCTTATGACGCAGAACCTCGGTTTTTCCGCTCGCAACGTGATGGACTAGTTTCAAGGCGTGAGAAAAGTTCAAGTCATTCAAATGAGGAAACTGAACCTCTAAGAAGTGATGTAGATACAGATTCAGAACCTTTAAATTCAGCTGAAAAATGGAATGAATGTGCTTGTGAGGATGAAACGAAGATATACCGTTCTAAGTCCGCATCAAGACTTTCATCAGCAAAATATACAGCTGGAGCTGGACTCATTTATGCGTCATCCGAAGAAGAGGATATCTGTCCAACTTGTCTTGAAGAATATACTAAAGAGAATCCAAAGATAATGACAAAATGCTCTCATCATTTTCACCTTGGTTGCATCTATGAGTGGATGGAGAGAAGTGACAACTGTCCAGTTTGTGGAAAGgAAATGGAATTTGATGAAACAACTTACTCTTGA 690 0.3768 MGSVCCCLSFDDFEDYANPNNPVYRNCVCFSCLLQNLLNVYSSIFRRGEAHSIPSSLQGTASMTSAGSLDNSLSDMYRSPPRPLPYDAEPRFFRSQRDGLVSRREKSSSHSNEETEPLRSDVDTDSEPLNSAEKWNECACEDETKIYRSKSASRLSSAKYTAGAGLIYASSEEEDICPTCLEEYTKENPKIMTKCSHHFHLGCIYEWMERSDNCPVCGKEMEFDETTYS 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02292 229 ProSiteProfiles Zinc finger RING-type profile. 177 217 IPR001841 -
Tsu06g02292 229 MobiDBLite consensus disorder prediction 91 130 - -
Tsu06g02292 229 MobiDBLite consensus disorder prediction 55 75 - -
Tsu06g02292 229 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 1 226 - -
Tsu06g02292 229 SMART ring_2 177 217 IPR001841 -
Tsu06g02292 229 Pfam RING-H2 zinc finger domain 172 217 IPR024766 GO:0008270
Tsu06g02292 229 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 149 226 IPR013083 -
Tsu06g02292 229 SUPERFAMILY RING/U-box 172 224 - -
Tsu06g02292 229 MobiDBLite consensus disorder prediction 55 130 - -
Tsu06g02292 229 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02292 Tsu-Chr6 29052284 29056729 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02292 1 226 C3H Transcription Factor Family AT5G15790 57.143 3.76e-90 263
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02292 - - gmx:100777068 413.305
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02292 06 29052284 29056729 Tsu06g02292 06 29052284 29056729 ECH