Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02280 ATGTTGTTCTTCCCTTTCCTTAAACCTTGTCCATGCATgcttttgttcttcttctttacGCTGTTCTACACTTCAACAGAAGCATATGATCCACTCGACCCATATGGAAATATCACAATCAAATGGGACATTCGAGAATGGACGCCTGATGGTTATGTTGCTGTTGTTACGATGAACAATTTCCAACAATATCGCCATATATCAGCACCAGGATGGTCATTAGGCTGGACCTGGGCTAAGAAGGAGGTAATATGGCAAGTGGTGGGAGGTCAGACAACTGAACAAGGAGACTGTTCAAAATTTAAGGGAAACATCCCACATTGCTGTAAAAGAAAACCGACTGTTGTGGATTTACTTCCCGGAACGCCTTACAACCAGCAGATAGCGAATTGTTGTAGAGGTGGTGTACTCAGCTCATGGGCACAAGATCCAACAAATGCAGTTTCGGCGTTTCAAGTCAGCGTTGGTAGTGCTGGCACAAATAACAAAAGTGTCAAACTACCGCTAAATTTCACCTTGCAAGCACCAGGACCAGGCTATACATGCGGACAAGCGAAAATTGTGACTCCTACTAAATTTACAACACCAGACAAAAGGAGAGTAACTCAAGCACTTATGACATGGAATGTGACATGCACATACTCACAATTTCTAGCTCAGAAAACTCCAACTTGCTGTGTCTCCCTCTCGTCATTCTATAATGATACAATTGTACCCTGCCCGACATGTTCGTGTGGATGCCAAGGCAAGTCAGCTCAATCAGGAAGCTGTGTAGATCCAAGAGCACCACATTTGGCTTCAGTTGTTAAAGGCGCCGGAAATAGTAGTATTACGCCTTTGGTTCAATGTACAAGTCATATGTGTCCGATACGAGTTCACTGGCACATTAAACTTAACTATAAGGAGTACTGGCGAGTGAAGGTTACTATTACTAATTTCAATTACAGGATGAATTATTCAGATTGGAACTTGGTCGTGCAACATCCGAACTTTGACAATCTGACTCAACTTTTCAGTTTCAACTACAAATCAATAAATCCATATGGGTCGATAAATGATACAGCAATGCTTTGGGGTGTTAAATTCTACAATGATTTCCTCATGCAAGCTGGTCCTATTGGTAATGTACAATCAGAGCTACTTTTTCGAAAGGATGATTCTTTTATGTTCGACAAGGGTTGGGGGTTTCCTCGGAGGATCTATTTCAACGGTGATAACTGTGTGATGCCACCACCTGATGCTTATCCATGGTTACCAAATTCTGGTTCGAAGCACCAGCAAATCTCAGGACGAGGACGTAGACGTTTTAGAATCATTGTGGGACGTTCTTCTCCTTGTTGCAGCTGTTCTTCTTCCTTGCACGAAGGTAACTCACACACCGATAAAGCTGAAGGGTTATCGAATGGTTGTGAAGCTGCACCCTTGGTCGACGGTGGCGTTGGTGGACACCTCTTCGGTGCTGATAAACATAGACAGGAAAATGCCCCTCAGGGTGCAGAAAGAGGGAAGGCAGAAAAGAGTTCTCTTGATGAAGTCGTGAATCAAGTGAGTAGTACCGGCGATGGCGTAGTTTTGAATGATGAAGTTGAGAAAATATCTGTTTCTCCGATTGGTGATCTAACTAGAGCTAGATTTGACCATGAAGAGAACGACGAGCCTAATATTACTATCCCTAATTGCAAGCATGTTGCATTGGCTGTGTCTCACATTTGA 1713 0.4267 MLFFPFLKPCPCMLLFFFFTLFYTSTEAYDPLDPYGNITIKWDIREWTPDGYVAVVTMNNFQQYRHISAPGWSLGWTWAKKEVIWQVVGGQTTEQGDCSKFKGNIPHCCKRKPTVVDLLPGTPYNQQIANCCRGGVLSSWAQDPTNAVSAFQVSVGSAGTNNKSVKLPLNFTLQAPGPGYTCGQAKIVTPTKFTTPDKRRVTQALMTWNVTCTYSQFLAQKTPTCCVSLSSFYNDTIVPCPTCSCGCQGKSAQSGSCVDPRAPHLASVVKGAGNSSITPLVQCTSHMCPIRVHWHIKLNYKEYWRVKVTITNFNYRMNYSDWNLVVQHPNFDNLTQLFSFNYKSINPYGSINDTAMLWGVKFYNDFLMQAGPIGNVQSELLFRKDDSFMFDKGWGFPRRIYFNGDNCVMPPPDAYPWLPNSGSKHQQISGRGRRRFRIIVGRSSPCCSCSSSLHEGNSHTDKAEGLSNGCEAAPLVDGGVGGHLFGADKHRQENAPQGAERGKAEKSSLDEVVNQVSSTGDGVVLNDEVEKISVSPIGDLTRARFDHEENDEPNITIPNCKHVALAVSHI 570
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02280 570 Pfam COBRA-like protein 52 215 IPR006918 GO:0010215|GO:0031225
Tsu06g02280 570 PANTHER PROTEIN COBRA 7 426 IPR006918 GO:0010215|GO:0031225
Tsu06g02280 570 PANTHER COBRA-LIKE PROTEIN 7 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02280 Tsu-Chr6 28759936 28765288 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02280 24 440 COBRA Gene Family AT3G02210 75.656 0.0 676
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02280 - - gmx:100783820 768.844
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02280 06 28759936 28765288 Tsu06g02280 06 28759936 28765288 ECH
Tsu04g00288 04 2594956 2598923 Tsu06g02280 06 28759936 28765288 PCT