Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02258 ATGGACGAGCAAAAAACGAACCCAATCGAAGAAGGAAGAGCCACGAAGTACGAGAAACTCTCCTCTTTCGTTTTTAAACTCGATATGCATTGCGATGGATGCACccaaaagataaaaaatgtCGTTTGTAAACACGACGGTGTGTATTGTGTTAACATCGATAGGCCTAGTAATAGACTGATGGTTACTGGATACGTGGACCCTGACAAGGTGCGAGATAAACTGGAGGCTAAACTTAAGAGGAAGGTTGCGCTTTCCACGGAAAATAAACTTTATGACGTGTTTTTAAGTTTTAGAGGGAAAGATACTCGTGCATCATTCACTTCACATCTCTATGCTTCACTTCAAAATGCCGGAATTAGCGTTTTTAGGGACGATGATTCGCTTCAAAGAGGAGATCAAATCTCAACATCTTTACTTTTTGCGGTAGAAGACTCTCGGATTTCGGTGATTGTTTTTTCAAGGAATTATGCAGATTCGAGATGGTGTTTGAATGAGTTGGTAAAGATAATGGAGTGTCAGAGAACCATGGGGCAAATAGTTGTGCCGGTGTTCTATGATGTAGATCCCTTTGAAGTACGTCACCAAAAAGGCGTGTTTGGTAAAGCATTTCAGAATCTCTTGAATAGAATTTCAAAGAAGGAAGAAGAGTCCATTCCAAAGGAGGAAGACACCCTTTTAAAGGAGGAGGAAGACGACTGGAGAGAGGCACTTCAATGGGCTGCTAGCATTGCAGGATTTGTAGTCCTAAATTCCAGGAATGAAAGTGAGGCTATCAAGGATATTGTTGAAAATGTTACACGTTTGCTTGACAAGACAGACTTGTTTATTGCAAATAATCCGGTGGGAGTTGAATCTCGAGTGCATGATATGATTAAATTACTAGACCAAGATATCCAACAATCATATGATGTTCTCTTACTAGGGCTGTGGGGTATGGGAGGAGCTGGTAAAACAACCATTGCGAAAgctatttataataaaattggcCGCAATTTTGAAGGTAGAAGCTTCCTCGCAAATATTAGGGAAGTTTGGAAGGAAAATGCTGCACAAGTGAATTTACAAGAACAACTTCTCTTTGATATCTGCAAAGAAATGACAACCAAAATACCAAGCGTTGAATATGGTAAAATCATATTAAAGGATAAACTCTGCCATAAAAGAGTACTAATTGTACTTGATGATGTCAATACATTAGACCAACTAAATGCATTATGCGGAAGTCGTACATGGTTTGGTTCGGGAAGCAGAATAATCATCACAACAAGGGATAGACATATACTTCGTGGTAAAAGGGTTAATCAAGTATTCAAAATGAAACACATGGATGAAAGTGAgtcaattgagctatttagctGGCATGCATTCAAGCAAGCAAGTCCTACAAAAGGTTTTGCTGAAATTTCTAGAAATGTAGCTGAGTATTCTGGAGGATTGCCACTGGCTTTGGAAGTCCTCGGGTCATATTTGTTTGAAAGGGGGCTAACAGAATGGAAAAGTGTATTGGACAAACTCAAAAGAATTCCAAATGATCAAGTGCAGAAGAAGTTAAAAATAAGCTATGATGCTTTAAGTGATAATTACGAGAAAGAAATATTCCTTGACATAGCGTGTTTCTTTATTGGAATGGACCGAAATGATGTTACACTTATATTAAATGGATGTGGTCTTTTTGCAGAAATTGGAATAAGTATCCTTGTTGAGCGAAGCCTTGTAACTGTTGATGATAAGAATAGACTTGGAATGCATGATTTGTTGCGAGATATGGGAAGAGAAATCATTCGTGAGAAATCACCAGAGGACCTTGAGGAGCGTTGCAGGTTGTGGTTTAATGAGGATGTCCTTCATGTATTATCTGAACAAACTGGAACAAAAGCTATTAAGGGGCTGGCTTTGAAGTTACCAACAGCTAATGCAAAATGTTTTAGTTCTAAAGCAttcaagaagatgaagagacTCAGATTGCTTCAACTAGCTGGGGTAAAACTTGATGGAGATTTTGAATATCTTTCGAGAAATCTAAGATGGCTGTCTTGGAATGGATTTTCTTTAACATCTATACCTGCAAActtttatagagaaaatttaGTTTCCATCGAGTTAGAGAATAGCAATGTCAAACTTTTGTGGAAAGAGGACCAGAAGATGGAAAAGCTAAAAATTCTCAATCTTAGTCATTCTCATTATCTCACACGAAGCCCTGACTTTTCAAACATGCCTAATCTTGAAAAGCTAATACTCAAAGATTGTCCAATGTTGTCTGAGATTTCTCCTAGTATTGGAGATCTCAGTAAAATTCTTCTAATAGATTTGGAAGATTGTGTTAGCCTTCGCAGCCTTCCAAGAAACACCTATAAGTTGAAATCTTTGAAAACACTCATTCTTTCTGGGTGTTTAAGGATTGATAAGTTGGAAGAGGACTTGGAACAGATGGAATCATTAACCACTCTGCTTGCAAATGACACTGCAATAACAAGAGTACCCTTTTCAGTAGTAAGGTCAAAAAGCATTGGATATATTTCTTTGTGCGGCTATGAAGGGTTTTCAAGTGATGTGTTTCCATCTATCATTTTGTCTTGGATGTCACCAACATGTAATATCCCATCCCCATTTCAAACATCTAATATCATGTCATCTCTTGTTCCTTTGGATGTACCACATAGTAGTTCATACGAACTATCATCGATTTCCAAGTACCTTCCAAGTCTTCGAAGTCTTTGGATAGAGTGCAGCTCAGAACTTCAACTTTCTCAGGATGCAGCAATAATTTTGGATGCCTTATTTGCTACAAATATTCAGATGGAACCAACTGCAATTACAGCACAAGCATCAAATATGACTACTTGTACTTCACAAGTATCAAAACATTCCTCGAAGTCTCTTTTAATTCAAATTGGAATGAATGGGCAAGTCACTAATATTCTGAAAGAGATAATTTTACAGAATATTGATGTCAGTGGGACTGGTGGTTGTTTCCTCCCCGGTGATAGTTATCCAAATTGGTTAACCTTTAACTCTGAAGGTTCTTTTGTAACTTTTCAAGTCCCTCGTGTGGAAGGGCGTAACTTGAAGACAATAATGTGCATTGTCTATACTTCAACCCCAGATAACGTAACATCAAGTGGCCTTAAAAACATGTTAGTGAAAAATTACACAAAGGCCACCATCCAGCTCTATAAGAGTGAGACATTAGTCTCTTTTGAAGATGAGGAGGGGCAGAGAGTAGTATCAAGTATAGAACCTGGTGACAAAGtggaggttgttgttgtttttgagaaCAATTTCATTGTGAAGAAGACAGTAGTTTATCTTGTATATGATGAACCAATTGGCAAAAATATGGAGTTATATGACGTACCAGATTTGAATGCCGTTGCTTGTagtgatgatgaaaatgaaCACTCTGCAAAGAGATTCTCTTCTGAAAACAAGCCCACTGATGACTTGAACCAGaacagaaagaagaaaaatcgaGTGGAATGA 3486 0.3657 MDEQKTNPIEEGRATKYEKLSSFVFKLDMHCDGCTQKIKNVVCKHDGVYCVNIDRPSNRLMVTGYVDPDKVRDKLEAKLKRKVALSTENKLYDVFLSFRGKDTRASFTSHLYASLQNAGISVFRDDDSLQRGDQISTSLLFAVEDSRISVIVFSRNYADSRWCLNELVKIMECQRTMGQIVVPVFYDVDPFEVRHQKGVFGKAFQNLLNRISKKEEESIPKEEDTLLKEEEDDWREALQWAASIAGFVVLNSRNESEAIKDIVENVTRLLDKTDLFIANNPVGVESRVHDMIKLLDQDIQQSYDVLLLGLWGMGGAGKTTIAKAIYNKIGRNFEGRSFLANIREVWKENAAQVNLQEQLLFDICKEMTTKIPSVEYGKIILKDKLCHKRVLIVLDDVNTLDQLNALCGSRTWFGSGSRIIITTRDRHILRGKRVNQVFKMKHMDESESIELFSWHAFKQASPTKGFAEISRNVAEYSGGLPLALEVLGSYLFERGLTEWKSVLDKLKRIPNDQVQKKLKISYDALSDNYEKEIFLDIACFFIGMDRNDVTLILNGCGLFAEIGISILVERSLVTVDDKNRLGMHDLLRDMGREIIREKSPEDLEERCRLWFNEDVLHVLSEQTGTKAIKGLALKLPTANAKCFSSKAFKKMKRLRLLQLAGVKLDGDFEYLSRNLRWLSWNGFSLTSIPANFYRENLVSIELENSNVKLLWKEDQKMEKLKILNLSHSHYLTRSPDFSNMPNLEKLILKDCPMLSEISPSIGDLSKILLIDLEDCVSLRSLPRNTYKLKSLKTLILSGCLRIDKLEEDLEQMESLTTLLANDTAITRVPFSVVRSKSIGYISLCGYEGFSSDVFPSIILSWMSPTCNIPSPFQTSNIMSSLVPLDVPHSSSYELSSISKYLPSLRSLWIECSSELQLSQDAAIILDALFATNIQMEPTAITAQASNMTTCTSQVSKHSSKSLLIQIGMNGQVTNILKEIILQNIDVSGTGGCFLPGDSYPNWLTFNSEGSFVTFQVPRVEGRNLKTIMCIVYTSTPDNVTSSGLKNMLVKNYTKATIQLYKSETLVSFEDEEGQRVVSSIEPGDKVEVVVVFENNFIVKKTVVYLVYDEPIGKNMELYDVPDLNAVACSDDENEHSAKRFSSENKPTDDLNQNRKKKNRVE 1161
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02258 1161 Pfam NB-ARC domain 287 525 IPR002182 GO:0043531
Tsu06g02258 1161 SMART AAA_5 304 444 IPR003593 -
Tsu06g02258 1161 PANTHER RCT1-LIKE RESISTANCE PROTEIN, PUTATIVE-RELATED 97 1107 - -
Tsu06g02258 1161 Pfam Heavy-metal-associated domain 25 80 IPR006121 GO:0046872
Tsu06g02258 1161 Pfam TIR domain 92 266 IPR000157 GO:0007165
Tsu06g02258 1161 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 97 1107 IPR044974 GO:0006952
Tsu06g02258 1161 PRINTS Disease resistance protein signature 715 731 - -
Tsu06g02258 1161 PRINTS Disease resistance protein signature 307 322 - -
Tsu06g02258 1161 PRINTS Disease resistance protein signature 384 398 - -
Tsu06g02258 1161 PRINTS Disease resistance protein signature 477 491 - -
Tsu06g02258 1161 Gene3D Ribonuclease Inhibitor 621 984 IPR032675 -
Tsu06g02258 1161 Gene3D - 275 437 IPR027417 -
Tsu06g02258 1161 CDD HMA 29 77 IPR006121 GO:0046872
Tsu06g02258 1161 Gene3D - 88 274 IPR035897 -
Tsu06g02258 1161 SMART till_3 91 244 IPR000157 GO:0007165
Tsu06g02258 1161 Gene3D - 442 526 IPR042197 -
Tsu06g02258 1161 SUPERFAMILY Toll/Interleukin receptor TIR domain 86 246 IPR035897 -
Tsu06g02258 1161 SUPERFAMILY L domain-like 633 915 - -
Tsu06g02258 1161 SUPERFAMILY "Winged helix" DNA-binding domain 513 619 IPR036390 -
Tsu06g02258 1161 MobiDBLite consensus disorder prediction 1131 1161 - -
Tsu06g02258 1161 Coils Coil 802 822 - -
Tsu06g02258 1161 SUPERFAMILY HMA, heavy metal-associated domain 24 77 IPR036163 GO:0046872
Tsu06g02258 1161 ProSiteProfiles TIR domain profile. 90 270 IPR000157 GO:0007165
Tsu06g02258 1161 ProSiteProfiles Heavy-metal-associated domain profile. 29 76 IPR006121 GO:0046872
Tsu06g02258 1161 Gene3D - 22 87 - -
Tsu06g02258 1161 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 270 537 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02258 Tsu-Chr6 28448370 28527085 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02258 87 832 WRKY Transcription Factor Family AT4G12020 30.378 1.22e-86 307
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02258 - - mtr:MTR_6g015695 1629.77