Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02240 ATGATTAACATTCCGAAAGACGCCGCCGAATTTCCATTAAAACAAGAAGTTCTTCCATCAAATGCTTCAACTacctcatcatcatcaacatcacaATGGCTAAAACTAAAAGATCCAAGAATTGTGAGGGTATCTAGAGCCTTTGGAACAAAAGATAGACATAGCAAAGTATACACAATTAAAGGATTAAGAGATAGAAGGGTAAGACTTTCAATCCAAACAGCAATTCATCTCTATGATCTTCAAGATAGGTTAGGGCTTAATCAACCTAGTAAAGTTGTTGATTGGTTGCTTAATATAGCTAAGGATGAAATTAATGAGCTTCCACCACTTCAAATACCTCAAGGAAATTTCACCTTAGGTTATCCATCTTTTGCTAATATTTCAAATGATGATGTTAGCCAAAATAGTACTTCTATTTGGAAATCAAATTCTAAACAATTTTTAGGAGAAATTGTTACTAACAAAGGAAATTGGATAAATAGAAATGAAGacgagaaagagaagaaagaagaccAAGATGCTAATTGTGCACGACATGCTTTGCCAAGTAATCTTATATCACATTTAGTGTCTGATAATATCTCGAATAAGATTATCTCTAGTGGACCAAACCAACCTTCTTTTTTGGGATTGTTGAACACCATACCACTTGATTATCAAATGGAGACTTCATCTAATGATCATGTTGCTCATGAGTTATCAAATTTTGGATTTGTTAACCAAATTAAACATATAGATGGAATTGATGTTGTACCTTTTCCATCATCATTGTCTTTGTCAACACAACAATATTTCCCTTCACATGTTGGAACAATGGAGATGGATCCAAGACAAATGAATTATAACTATGATCAAATGTGGAGTGCAAGTTCTCAAAACAATTCTATCAATCCAACTCAACAACTCATTAGGGTAACTCCTAAAGACCAAGTTTTTGAGTTGAAACAAGAATTCAGGTTATCTATGGAGGGAGATACTACTAGTGTTGTTGGTGAAAATAAAGTGAATTTTGATTGTCTAAGGGGCGACATTAGTGAAGTGGAGTTGCAAGTAAGACGCATGAGTAATTTTGGGATGGGTATGGAAATCCAGATTTCTGATCATGCTAGGCCAGAAGAGTTAGAGAAAAGACAACAAATATGTGCTTTAGTACTGCTGTGCTATATAACGCATTCTTCGCATTTGTTGCGAACAATGTCAGGATATACCCGTAGTGGAAAAAATGTTGAGAATTCTGATAATGAGTCTAGGTCTGTTGAACTGATTGCACAGTTAGTACAAACTGAAAAATGCCGAGACATCATTTGCATGAGCCCTCAAGCATTTCTGCAGCTTTGTAAAAAATTAAGGTCATCTGGTAGAATGAAGGATTCAACAAGGGTTCCACTTACTGTTGAGGGGCAAGTTGCTGAATTCTTATACATTGTAGGACATGCTGCTAAAAGTCGAACTGTGcctttccttttccatcattcAATGGAGACATTTAATCGATGCTTTGACAATGTTTTACGAGCAATCATATCATTAGAAAATGAGTTACTTGTTCAACCTTCTGATGTAGATGTACCCACACAAATACTTAATGATGAAAAATTCTATCCTTATTTTAAGGATTGCATTGGAGCCATCGCTGTAATGCATAGTCGAGTGAAGGTACCAGTGAAAGATGCCCCTCGATTTTGTGCAAGAAAAGGCTTCCCCACACAAATTATCTTTGCTGCTTGTAATTTTGATATGAAATTCACATATGTTTTAGCTGGGTGGGAAGGATCAGCATCTTATTCTAGAATCTTAAATGACGCTTTAACTCGAAAAGATCCGTTGAAAATTCCTAATGGAAAATATTATCTTGGTCTTCCGGGACCTATGCCAATTGGGGTATTGTCTCCGTATAACCGTGTGCTCTATCAGTTGAAGGACTTTTCAAATCATGAACCTCAAAATCGTGAAGAACTATTCAACCTTCGTCATTCTTTACTTCAATTCACGGCCGAGAAAACTTTTGGGGTTCTAAAAAAAAGATTTCCAATTATAGCTGGTGTTGCTGAaccatttttttcatttgaaaccATGAGGCGTATAATCATTGCTTGTTGTATTTTGCATAACTTCCTTATGGACGTTGACATTGATGAACAAATGATTGCTGAAGTAGACCGTGAATTGCTACCTGACGAGGTACGGAGTAACTTCCGTGATGAGAATTTTGAGAATGAGCGTAGGCCTGCTCAGTTGATGGCAAAATTAGTACAAACTGAAAAATGTCGACACATTATTCGCATGAGCCCTCAAGCATTTCTGAAGCTCTGTGAGAAGTTAAGATCGTCTACGGGAATGGAGGATTCAACAAGGGTTACAGTTGAGGGGCTAGTTGCTGAAATTTTATACATTATAGGGCAGGATGCAAAAAGTCGAACCACACCTTTCCTTTTTCATCAGTCAGGGGAGACATTTAATCGCCGCTTTCACTATGTTTTAAAAGCCATCATGTCATTACACCGTGAGTTCCTTCCCCAACCTTCTGGTGCAGATGTACCTTCCCAAATACTTAACGACAGCAAATTCTATCCTTATTTTAAGGAAAGTATTATTGCACGTGCAGGATTTACGCCAAAACCTGGGGTACTGACACCATCTAGAGGTATCAGTTATCGTTTGAAGCAGTATTCAACTCAAGGACCTCAAAATTATCAAGAACTATTCAACTTTCATCACTCTTTACTTCAAAATGTGATTGAGAGAGCTTCTGGAGTCCTCAAGAAAAGATTTCCGATTACAACTGGTGAAAATGAATCATATTTTTCCGTTCAAACCATGACGTGTATAATCATTGTTTGTCGTGTTTTGCACAACTTTTTTATGGGCATTGGCGAACAAATAATTGCTGAAGTAGATCGTGAATTGTTACGTGACAAAAGCCGTTCTGTATTGCTAAAACGAAAACATGAATTGAACTCTGAAGAAAAACCGAGTTTAAGCGAGACATTTGCAGTATCTTTCTCTGATAAATATTAG 3021 0.3572 MINIPKDAAEFPLKQEVLPSNASTTSSSSTSQWLKLKDPRIVRVSRAFGTKDRHSKVYTIKGLRDRRVRLSIQTAIHLYDLQDRLGLNQPSKVVDWLLNIAKDEINELPPLQIPQGNFTLGYPSFANISNDDVSQNSTSIWKSNSKQFLGEIVTNKGNWINRNEDEKEKKEDQDANCARHALPSNLISHLVSDNISNKIISSGPNQPSFLGLLNTIPLDYQMETSSNDHVAHELSNFGFVNQIKHIDGIDVVPFPSSLSLSTQQYFPSHVGTMEMDPRQMNYNYDQMWSASSQNNSINPTQQLIRVTPKDQVFELKQEFRLSMEGDTTSVVGENKVNFDCLRGDISEVELQVRRMSNFGMGMEIQISDHARPEELEKRQQICALVLLCYITHSSHLLRTMSGYTRSGKNVENSDNESRSVELIAQLVQTEKCRDIICMSPQAFLQLCKKLRSSGRMKDSTRVPLTVEGQVAEFLYIVGHAAKSRTVPFLFHHSMETFNRCFDNVLRAIISLENELLVQPSDVDVPTQILNDEKFYPYFKDCIGAIAVMHSRVKVPVKDAPRFCARKGFPTQIIFAACNFDMKFTYVLAGWEGSASYSRILNDALTRKDPLKIPNGKYYLGLPGPMPIGVLSPYNRVLYQLKDFSNHEPQNREELFNLRHSLLQFTAEKTFGVLKKRFPIIAGVAEPFFSFETMRRIIIACCILHNFLMDVDIDEQMIAEVDRELLPDEVRSNFRDENFENERRPAQLMAKLVQTEKCRHIIRMSPQAFLKLCEKLRSSTGMEDSTRVTVEGLVAEILYIIGQDAKSRTTPFLFHQSGETFNRRFHYVLKAIMSLHREFLPQPSGADVPSQILNDSKFYPYFKESIIARAGFTPKPGVLTPSRGISYRLKQYSTQGPQNYQELFNFHHSLLQNVIERASGVLKKRFPITTGENESYFSVQTMTCIIIVCRVLHNFFMGIGEQIIAEVDRELLRDKSRSVLLKRKHELNSEEKPSLSETFAVSFSDKY 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02240 1006 PANTHER UNCHARACTERIZED 405 743 IPR045249 -
Tsu06g02240 1006 Pfam DDE superfamily endonuclease 553 705 IPR027806 -
Tsu06g02240 1006 Pfam DDE superfamily endonuclease 850 953 IPR027806 -
Tsu06g02240 1006 ProSiteProfiles TCP domain profile. 50 108 IPR017887 -
Tsu06g02240 1006 Pfam TCP family transcription factor 49 175 IPR017887 -
Tsu06g02240 1006 PANTHER NUCLEASE HARBI1-RELATED 405 743 - -
Tsu06g02240 1006 PANTHER NUCLEASE HARBI1-RELATED 868 991 - -
Tsu06g02240 1006 PANTHER NUCLEASE HARBI1-RELATED 738 854 - -
Tsu06g02240 1006 PANTHER UNCHARACTERIZED 868 991 IPR045249 -
Tsu06g02240 1006 PANTHER UNCHARACTERIZED 738 854 IPR045249 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02240 Tsu-Chr6 28200685 28209093 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02240 33 172 TCP Transcription Factor Family AT3G02150 53.521 5.32e-38 144
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Tsu06g02240 DDE_Tnp_4 1.3e-09 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02240 - - gmx:102665991 430.254