Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02237 ATGCAAAACAACATGAAACTGCGTGATTTTGTTACAACAACAAATCCTGCTTCTCAATACGTCGCCGTTTCACCCTATTCCGACAAATCAACACTTCTCCGTCTGAAAACCTCCCTCTCCGATCCTGCCGGAGTACTCTCTTCATGGAGCCCTTCCTCCGGCCACTGTTCCTGGTATGGTGTTCACTGTGATTCAAACTCACGTGTCGTTACTCTCAATATCACCGGTGCCGGAGATGGTAACCGGAGTTCACACCCGTGTTCTGATTTTGGTATGTTTCCGCTTTATGGATTTGGAATTAGGAGAAGCTGTTTGGGTGCTAAGGGTTCTTTGTTTGGAAAGTTTCCATCTTTGATCAGTGGGTTAACTGAGCTTAGGGTTTTGTCTTTACCTTTCAATGGGTTGGTGGGTTCAATTCCTCAAGAGATTTGGAGTATGGAGAAACTTGAAGTTCTTGATTTAGAAGGTAATTTCATTAGTGGTTATTTACCTTTTAAATTTCAAGGTTTGAGAAAATTGAGGGTTTTGAATTTGGGGTTTAATAAGATTGTTGGAGTTGTACCTAATGTTTTATCTTCTCTTGAGAGTTTGGAGGTTTTGAATTTAGCTTCAAATGATTTGAATGGTTCTGTTCCTGGTTTTGTTGGGAAGCTTAGAGGGGTGTATTTGTCTTTTAATCAATTTAGTGGAGTTATTCCGGAGGAGATTGGTGAAAATTGTGGGAAGCTTGAGCATTTGGATTTGTCGGGTAACTCTTTGGTTGAACGGATTCCGAAGAGTTTGGGGAATTGTGTTGGGTTGAGGACACTTTTGTTGTATTCAAATTTGTTGGAAGAGGGTATTCCTGCTGAATTTGGGAACCTTAAGAGCCTTGAGGTGTTGGATGTTTCGAGAAATACGCTTGATGGTTCTATTCCTCGTGAGCTTGGGAATTGTAAGGAGCTTTCTGTTGTTGTGCTTTCCAACCTTTTCGATCCAATTGGGGATGTTGGGTTTGATAGTTTGAATGATGAGTTGAATTATTTTGAAGGTTCAATGCCTGAAGAAGTTGTGTCACTTCCTAAGCTTAGGATTTTGTGGGCTCCGATGGTGAATTTGGAGGGAAGTTTTCCTAGGAGTTGGGGTGCTTGTGCTAACTTGGAGATGATCAATTTGGCTCTGAATTTTTTCACCGGAGAGTTCCCAAACCAGCTCGGTTTATGCAAGAAGCTGCATTTTCTTGATCTGAGCTCAAACAATCTTACCGGGGAGCTTTCTGAGGAACTTAATGTTCCATGTATGACTGTGTTTGATGTTAGTGCTAACATGTTGTCTGGTTCAGTTCCTAATTTCTCCAAAAATGTTTGTTCTCCCTTTCCTCTTTGGAACGAGAATCTGTTCGAAACTGACGACGCTGCGTCTCCCTATGCATCATATTTCTCATCAAAAGTTCGTGAGGGAACCCTTTTTGCATCACTAGGAGGAGTCGGTCTTTCAGTTGTTCACAACTTTGGGCAAAACAACTTCACCGGCATTCAGTCATTGCCAATAGCGCATGACAGGATGGAGGAAAAAAGTAGTTACACACTTCTTGTCGGAGAGAACAAGCTAACGGGACTATTTCCTACATATTTGTTTGAGAAATGTGACGGATTAGGTGCATTGCTTTTGAATGTCAGTTACAATAGCATTTCTGGTGATATTCCTTCTAATATTAGTAGAATGTGCAAATCTCTGAAATTTTTGGATGCATCTGGAAATCAAATTTCAGGACCAATTCCCCTTGGTTTAGGGGATTCGGTCTTACTTGTTTCCCTGAACCTCAGTGGAAACCGGTTACATGGTCATATTCCCACCAGCATTGGACAGATGAAGGATCTgaagtttctttctttggctGGTAATAACTTGAGTGGCTCAATTCCTTCCGATATGGGGCAGCTGTACTCTTTACAGGTCTTGGACCTTTCTACAAACTCTCTTACTGGTGAGATTCCAAAGTTTTTCGAGAACATGAGAAATCTGACCAATGTTTTGCTCAATAACAACAACCTTTCTGGACACATTCCTGCTGGTTTGGCAAATGTCACTTCACTCTCTGCATTCAATGTGTCTTTCAATAACTTATCTGGATACTTGCCATCAAATAGTAGCCTGATCAAATGCAGCAGTGCTGTTGGGAATCCATTTCTAAGTTCCTGCCGTGGAGTTTCTCTGACTGTGCCATCTGCAAATCAACAAGGTCAGGTTGATGAAAATTCTCCCATTGCATCACAAGCTACTGAAAAAAATAGTGATAATGGTTTCAATGCCATTGAAATAGCATCTATAACATCTGCTACAGCCATTGTTTCAGTTCTTATAGCCCTTATTGTTCTGTTTGTCATCACGCGAAAGTGGAAGCCGAGGTCGAGGGTCGGTGGTTCCATTAAAAGGGAAGTTACTGTTTTTACTGATATTGGTGCCCCGTTGACATATGAAAATGTTGTCCAAGCCACGGCAAATTTCAATGCAAGCAACTGTATAGGGAGTGGAGGATTCGGCGCAACTTATAAAGCAGAGATATCACAAGGAATCTTGGTTGCAGTGAAACGTCTTTCAGTTGGACGTTTCCAAGGTGTTCAACAATTCCATGCAGAGATTAAGACCCTTGGAAGGCTTCATCATCCAAACCTTGTAACTTTGATTGGCTACCATGCTAGTGAGACAGAGATGTTTCTCATATACAATTATCTTCCAGGTGGTAATCTTGAAAAGTTCATCCAGGAGCGATCCACAAGGGATGTGGATTGGAGAATTCTTCACAAGATTGCATTAGACATAGCTCGCGCACTTTCCTATCTGCACGATCAATGTGTACCGCGTGTTCTTCATCGCGATGTCAAACCTAGCAATATCTTATTGGACGACGATTTCAACGCTTATCTATCCGACTTTGGACTGGCGAGACTTCTCGGAACTTCAGAGACACACGCCACAACTGGTGTGGCAGGAACGTTTGGGTACGTTGCTCCTGAATACGCCATGACATGTCGTGTTTCCGATAAAGCTGATGTGTATAGCTATGGTGTGGTGCTTCTTGAGCTGCTAtcagataaaaaattattggacccttcattttcttcttatGGAAATGGTTTCAATATAGTAGCATGGGGATGCATGCTACTGAGGCAAGGAAGGGCAATGGAGTTTTTTGCTACTGGTTTATGGGATGCCGGACCGGAAAATGATTTGGTAGAGGTTCTTCACTTAGCAATTATGTGTACTGTTGATTCATTATCAACTAGACCTACAATGAAACAGGTTGTGAAAAGGCTAAAGCAACTTCAACCCCCATCATGCTAG 3327 0.4136 MQNNMKLRDFVTTTNPASQYVAVSPYSDKSTLLRLKTSLSDPAGVLSSWSPSSGHCSWYGVHCDSNSRVVTLNITGAGDGNRSSHPCSDFGMFPLYGFGIRRSCLGAKGSLFGKFPSLISGLTELRVLSLPFNGLVGSIPQEIWSMEKLEVLDLEGNFISGYLPFKFQGLRKLRVLNLGFNKIVGVVPNVLSSLESLEVLNLASNDLNGSVPGFVGKLRGVYLSFNQFSGVIPEEIGENCGKLEHLDLSGNSLVERIPKSLGNCVGLRTLLLYSNLLEEGIPAEFGNLKSLEVLDVSRNTLDGSIPRELGNCKELSVVVLSNLFDPIGDVGFDSLNDELNYFEGSMPEEVVSLPKLRILWAPMVNLEGSFPRSWGACANLEMINLALNFFTGEFPNQLGLCKKLHFLDLSSNNLTGELSEELNVPCMTVFDVSANMLSGSVPNFSKNVCSPFPLWNENLFETDDAASPYASYFSSKVREGTLFASLGGVGLSVVHNFGQNNFTGIQSLPIAHDRMEEKSSYTLLVGENKLTGLFPTYLFEKCDGLGALLLNVSYNSISGDIPSNISRMCKSLKFLDASGNQISGPIPLGLGDSVLLVSLNLSGNRLHGHIPTSIGQMKDLKFLSLAGNNLSGSIPSDMGQLYSLQVLDLSTNSLTGEIPKFFENMRNLTNVLLNNNNLSGHIPAGLANVTSLSAFNVSFNNLSGYLPSNSSLIKCSSAVGNPFLSSCRGVSLTVPSANQQGQVDENSPIASQATEKNSDNGFNAIEIASITSATAIVSVLIALIVLFVITRKWKPRSRVGGSIKREVTVFTDIGAPLTYENVVQATANFNASNCIGSGGFGATYKAEISQGILVAVKRLSVGRFQGVQQFHAEIKTLGRLHHPNLVTLIGYHASETEMFLIYNYLPGGNLEKFIQERSTRDVDWRILHKIALDIARALSYLHDQCVPRVLHRDVKPSNILLDDDFNAYLSDFGLARLLGTSETHATTGVAGTFGYVAPEYAMTCRVSDKADVYSYGVVLLELLSDKKLLDPSFSSYGNGFNIVAWGCMLLRQGRAMEFFATGLWDAGPENDLVEVLHLAIMCTVDSLSTRPTMKQVVKRLKQLQPPSC 1108
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02237 1108 SMART LRR_typ_2 240 264 IPR003591 -
Tsu06g02237 1108 SMART LRR_typ_2 146 169 IPR003591 -
Tsu06g02237 1108 SMART LRR_typ_2 170 193 IPR003591 -
Tsu06g02237 1108 SMART LRR_typ_2 641 664 IPR003591 -
Tsu06g02237 1108 SMART LRR_typ_2 665 688 IPR003591 -
Tsu06g02237 1108 SMART LRR_typ_2 194 216 IPR003591 -
Tsu06g02237 1108 SMART LRR_typ_2 288 312 IPR003591 -
Tsu06g02237 1108 Gene3D Phosphorylase Kinase; domain 1 793 904 - -
Tsu06g02237 1108 SUPERFAMILY Protein kinase-like (PK-like) 813 1100 IPR011009 -
Tsu06g02237 1108 ProSitePatterns Serine/Threonine protein kinases active-site signature. 949 961 IPR008271 GO:0004672|GO:0006468
Tsu06g02237 1108 PRINTS Leucine-rich repeat signature 404 417 - -
Tsu06g02237 1108 PRINTS Leucine-rich repeat signature 641 654 - -
Tsu06g02237 1108 SUPERFAMILY RNI-like 113 449 - -
Tsu06g02237 1108 Pfam Leucine Rich Repeat 242 264 IPR001611 GO:0005515
Tsu06g02237 1108 Gene3D Ribonuclease Inhibitor 472 739 IPR032675 -
Tsu06g02237 1108 Gene3D Transferase(Phosphotransferase) domain 1 905 1105 - -
Tsu06g02237 1108 SUPERFAMILY L domain-like 522 709 - -
Tsu06g02237 1108 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 17 1107 - -
Tsu06g02237 1108 Pfam Protein kinase domain 832 1030 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02237 1108 ProSitePatterns Protein kinases ATP-binding region signature. 835 857 IPR017441 GO:0005524
Tsu06g02237 1108 ProSiteProfiles Protein kinase domain profile. 829 1103 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02237 1108 CDD STKc_IRAK 835 1103 - -
Tsu06g02237 1108 Gene3D Ribonuclease Inhibitor 219 325 IPR032675 -
Tsu06g02237 1108 Pfam Leucine rich repeat N-terminal domain 27 64 IPR013210 -
Tsu06g02237 1108 SMART serkin_6 829 1107 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02237 1108 Gene3D Ribonuclease Inhibitor 330 457 IPR032675 -
Tsu06g02237 1108 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE RPK2 17 1107 - -
Tsu06g02237 1108 Pfam Leucine rich repeat 596 654 IPR001611 GO:0005515
Tsu06g02237 1108 Pfam Leucine rich repeat 148 207 IPR001611 GO:0005515
Tsu06g02237 1108 Gene3D Ribonuclease Inhibitor 26 218 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02237 Tsu-Chr6 28157163 28161224 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02237 21 1108 Receptor kinase-like Gene Family AT3G02130 62.970 0.0 1336
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XV Tsu06g02237 Pkinase 6.9e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02237 - - vra:106772082 1651.72