Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02230 ATGAAGCCTGATCAGGTGAACTTACTTCAGATGGTGCTGATTGATGAGAAGGGTGCGACGATCCATGCTACTGTTCGTCGTCAAATGCTGTATTTGTTTCGTTTGAAAATTACTGAGGGGGAGGTGTATAAGATGTCATTTTTCACTGTGTCACCAGAATCTGATCGTTATGGATTGTCTCTCACCTCTATTGGAGATATCTGTGGTCATGGACCTGATCATGATTTCTTAGTTGATGTTGTTGGGTTGATTACTGGTATTTCTGCTGAGAGGGAGTATATCTGTGATGGAAAGGTTACCAAGATGATATTGCTTGAGTTGACTGATAATAGTGGAAAGTGTGAGTGTGCATTGTTTGGTAGTTATGTTGATGATGTTCAAAGCATGATTGGCAAGAATGATGGTGGGTTGCCAGTTATTGTAGTCCAGTTTGCCAAAATTAAGATTTTCAGAGGTTGGGAATATATCTATTCAAAATGTTTTGAATGCTACAAGATTTATGGTGATCCCTCAATTCCAGAGATTGTTGCTTTCAAGGAAAGTCTTGCTGTTGATGGCCTTCAAAATGTTTCCTCTATCCCTACTATTGGGCCTCATGGTAAGCCATCTCTTGAGGAAGATTTTTTGGTGAAATATCCTAAAACTTCCATTGCTAATTTACTTGGAGCGGACGAGGATGGTGTTTATGTTGTTGGAGCTGTTGTTGATGGGTTGGTTGATGCTGAAGAGTGGTGGTATCCAGCATGTAGTTGTCATAGGAGTGTTACTGCTGATTCTGGTGCATACTATTGCACACAATGTGTCAAGCATGTTTTCAGAATGGTTCCAAGGTTTAGGGTAAAGTTGAGGGTTGATGATGGATCTGGCCAAGCTGTGTTTGTTGTGTTTGACAATGATATGAATCATTTGCTGGGGAAACATTGTCATGAACTGGTTGCTGCATCTAAGGAACAAAATGCTGGATATTGTCCTCCTGAGCTAGAGTTGCTTAGAGGCACGAAGTTGTTGTTCAAGGTAGAGAAGAGGTCCTCTGCTTCTCCACTGTTTGATCATTCATTCAGGGTTAAGAGAGTTTGCAATGATTTGTCTGTTATGGATGTGTTTGATACAGTGATTATGAGTTTGTCTGTTGCCTTTCATCATGGAGGACGTTTTGTTAGAGATTGGATTATCTCTTACAAAGGGGGGGAGAAAACTGTATTCAAACGTTTATATCCTGATAAGTGGACTTATTTTGAGATGACTAGTTTGGTTGAAGAAGACCTCAAAATTAGTAAGGGGTATAGGTTGTGGTGGATGCTAGATGAAGATGTTAATTTTAGGCTTGTAAGGTTAGTTGAAGATGCTTATGAAGTGAAGGAATATGCTGTTAGTAATAATTGTGTTGCAAACATATTTGTTGAGCATGATGTGGATGAAACAAGTGCGCTAGAAGATATTCCTAACTATATTAATCTTATGGGTGAAAGTTCTCAGGAGGTAGTGGATACAGACAAGGACATGTGGCCTGATAGGCCTGAAATAGAATATGAGGATATGTTGCCACCACTATATAAAAGAGCCCCAGGGAGACCAAAGAAACTAAGGAGGAGAAGTGCTGGTGAACCAAGACCTGGAAAATGGTCTAGGACTTCAGGGGATGGACAGATTAACAGATGTACCAGATGTGATGCAGAAGGCCACAATGCTAAGTCATGTAAGAGTAAAACAATAAACCCTGCTGCACAAAATAGAAAGAGGAAGCCACCAAAAGAAAAGACTCAAGCACCAGTCCAAGTTCAATCCAGTGCACCAGTCCAAGTTCAATCCAGTGCACCAGTGCATGTTCAGTCTCAAACACCAGTTGAAGCACCAGTCCAAGTTCAATCCAGTGCACCAGTGCATGTTCATTCTCAAGCACCATCTCAAGCACCAGTTGAAGCACCAGTTGAAGCACCAGTTGAAGCACCAGTTGAAGCACTAGTTGAAGCACCACCAGCACCAGTTGAAGCACCTgcaaagaagagaagaattgagGGACAATTCAAACCACCTGCAAAGGTAAAAACTGTCAAGCCAAAACCTGTCAATCCCAAACCTGTCAAGCCATCTGGTAGCATTAGTATACCACCATCTGCACAAGTTACCACATCTGTTAAACCATCTACATCTACCAGTGCACATGTGAAAACATTTTATAAGACTTATGGAACTACTAACACCACCACTGTTAAACCTATTGAACCAAAAAAGCCTAAACCAGTTAAGGCAAAGCTTGATTTAAGTAAAGTTAGAAGGAGTGGTAGGAACATTTTCAAGAGTCCAGCCAACAACAAAGGACCTGGGAGAGACATTGAATGCCGAATAGAAATTGTTGATGAAGATTATATTGGTGATGGTGGTCTGAcacaaaaaattgttgatgaagATTATATTGGTGATGTGGATGCGGAACAAGAATTTGTTGATAATACCCAGGATGAAGATTTTGTTGGGAATCTTATTGTTTCACCCTCATTTGTGAAACCTGGAGAAGAAAACTCTGAGAATCAACTTGGATCTCTGAAGCGAAATCTATTTGATGCATTCTCCGAATGTGATGATTTGCCTGGAAGTTCTTCCAAAACCGTGAAGCTTTCCAAAGACTGA 2628 0.4011 MKPDQVNLLQMVLIDEKGATIHATVRRQMLYLFRLKITEGEVYKMSFFTVSPESDRYGLSLTSIGDICGHGPDHDFLVDVVGLITGISAEREYICDGKVTKMILLELTDNSGKCECALFGSYVDDVQSMIGKNDGGLPVIVVQFAKIKIFRGWEYIYSKCFECYKIYGDPSIPEIVAFKESLAVDGLQNVSSIPTIGPHGKPSLEEDFLVKYPKTSIANLLGADEDGVYVVGAVVDGLVDAEEWWYPACSCHRSVTADSGAYYCTQCVKHVFRMVPRFRVKLRVDDGSGQAVFVVFDNDMNHLLGKHCHELVAASKEQNAGYCPPELELLRGTKLLFKVEKRSSASPLFDHSFRVKRVCNDLSVMDVFDTVIMSLSVAFHHGGRFVRDWIISYKGGEKTVFKRLYPDKWTYFEMTSLVEEDLKISKGYRLWWMLDEDVNFRLVRLVEDAYEVKEYAVSNNCVANIFVEHDVDETSALEDIPNYINLMGESSQEVVDTDKDMWPDRPEIEYEDMLPPLYKRAPGRPKKLRRRSAGEPRPGKWSRTSGDGQINRCTRCDAEGHNAKSCKSKTINPAAQNRKRKPPKEKTQAPVQVQSSAPVQVQSSAPVHVQSQTPVEAPVQVQSSAPVHVHSQAPSQAPVEAPVEAPVEAPVEALVEAPPAPVEAPAKKRRIEGQFKPPAKVKTVKPKPVNPKPVKPSGSISIPPSAQVTTSVKPSTSTSAHVKTFYKTYGTTNTTTVKPIEPKKPKPVKAKLDLSKVRRSGRNIFKSPANNKGPGRDIECRIEIVDEDYIGDGGLTQKIVDEDYIGDVDAEQEFVDNTQDEDFVGNLIVSPSFVKPGEENSENQLGSLKRNLFDAFSECDDLPGSSSKTVKLSKD 875
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02230 875 MobiDBLite consensus disorder prediction 700 719 - -
Tsu06g02230 875 SUPERFAMILY Nucleic acid-binding proteins 59 187 IPR012340 -
Tsu06g02230 875 CDD RPA1_DBD_A_like 11 57 - -
Tsu06g02230 875 CDD RPA1_DBD_B_like 79 182 - -
Tsu06g02230 875 Gene3D - 1 63 IPR012340 -
Tsu06g02230 875 Pfam Domain of unknown function DUF223 11 57 IPR003871 -
Tsu06g02230 875 Gene3D - 64 186 IPR012340 -
Tsu06g02230 875 CDD RPA1_DBD_C 221 339 IPR013955 -
Tsu06g02230 875 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 3 312 - -
Tsu06g02230 875 Coils Coil 869 875 - -
Tsu06g02230 875 Gene3D - 211 363 IPR012340 -
Tsu06g02230 875 PANTHER REPLICATION FACTOR A 1, RFA1 3 312 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu06g02230 875 SUPERFAMILY Nucleic acid-binding proteins 224 361 IPR012340 -
Tsu06g02230 875 MobiDBLite consensus disorder prediction 733 753 - -
Tsu06g02230 875 Pfam Replication factor-A C terminal domain 238 338 IPR013955 -
Tsu06g02230 875 MobiDBLite consensus disorder prediction 660 719 - -
Tsu06g02230 875 MobiDBLite consensus disorder prediction 513 599 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02230 Tsu-Chr6 28079440 28088217 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02230 13 311 Core DNA Replication Machinery Family AT5G08020 21.530 5.97e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02230 - - mtr:MTR_8g062030 382.104