LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu06g02227	ATGCAGTGCTGCAGTTTCTCAGGTCCTGTCAAGGAGAAGATCTCTGGTAGTGCATTACCTGAAAAGAAGCTCTCTGAATCAAGTTTTTCTGTCCCGAGTCAGACTCAAAAAGACTATAATGCAACCCATAGCCGACAGCTTGATAATTTTTCTACAAATGACATTTCTACATTGTCTTCTAAGAAATCAAAAGTTAAGAAGAAAGCCGGTAACGGATTATCTATTGCACCCGACCCTGCTGAGCTTCAAGATGCCAGCATTGGAAGATTTCGTGAGTTTTTGGAGGACTTATGTAGCAAGGCTGAATCGAATAGCGATCATCAAGATGAAGCAGTAGAATGGTTGCCATTGCCTCTTTCAGATCTTAGAACGCTTGTTAATGAAATAATGTCTATTCGTGAGAAGAAACTTTTGCATTTGGTCCCTGTAGAATTCCTTGTTAGACTGCTAAAGGTTTTAGATCATCAGATACACAGAGCAGAAGGCCTGTCAATTGAGGATTGTGACAATTCCAATTCAGAACAAGTTTCGTCTCTTTTAGCTGCGTTGGAATCCATTCATGCTGCACTGGCGGTGATGGCTCATACTGACATGCCAAAACAACTTTATAAAGAAGAGGTCATTGAGAGAATTCTGGAGTTTTCCAGGCATCAGATAATGGATGTAATGTGTGCATGTGATCCTTCATACCGCGCGTTATACAGACCTAGTGAAAATACTGCACTTGAAGttgatgatgaagaaaatgatgCTGAATATGGTTCAGCAAGCAAAAAACGACGTACTAGCAGCAAGACTGTAAAGTTGAAGAAATCAGCATCAAGCAGGTTCTCTAGTACTGTGAATGTTATTCTTCAGAAGTTGTGTACTGTTCTTGGACTACTCAAGGATTTGTTGTTAATAGAGAGGTTGTCAGATAGTTGCATTTTACAACTTGTAAAAACAAGCATTTCAACATTCTTGGTTGATAACATCCAGCTCTTGCAATTGAAGGCAATTGGTTTACTCAGTGTGATATTCTATTTATACACACAACATCGAACTTATGTGTTAGAtgaaatgcttcaccttctttGGAAATTACCACATTCAAAGCGAGCTTTAAGGAATTATCATATACGCGAGGACGAGCAAAGACAGATCCAGATGATTACTGCTTTGTTGATCCAATTAATTCATTGTAGTGCTAACCTTCCTGATACTTTAAGACAAGCATCAAGTGGTAACTCTGTATTGGAAGTCTCGGTTGATGCTAGTTATCCAACTAAATGCCGCGAAGCAGTAAGAGAGGCCTGCTGTCTATTTTGGAGCCGTGTACTTCAGCGACTTGCAAGTGTAAAGACTCAGGATGCTTCTGAACTGAAATCCGTAATGGAGAATCTTGTTACTGATTTACTGACCACTCTAAATTTACCCGAATATCCTGCTTCAGCTTCTATTCTAGAGGTTCTATGTGCTATACTAATTAATAATGCTGGGTCAAACTCCAAGGATTTCGCTGCACGTTCCATGGCAATTGATATTCTTGGCACTATTGCTGCAAGGTTGAAGCGTGATGCTGTGATTTGTAGCCGGGAAAAGTTCTGGGTACTTCAAGATTTACTTGGTGAGAATGCCGCTCCTCGTCATTATCCAAAAGATACATGTTGTATCTGTTTGGGTGGAAGGATTGAAAATTTGTTCATATGTTCCGGCTGCAATAGGCTTTTTCATGCTGACTGCCTGGACattaaagaaaatgaagttCCCAACCGGAACTGGTACTGTCATATGTGCATCTGCTCAAAGCAACTGCTTGTATTACAATCATATTGCAATTCCCAGCGCAAGGATGATGTAAAAAAGAATCGTAATGTGTCAATGGATGAATCTGCATTTTCTAACCACGAAATTGTTCAACAATTGCTTTTGAATTACCTTCAAGATGTCACCTCCGCTGATGACCTGCATATTTTCATTTGCTGGTTTTATCTGTGCGCATGGTATAAAAATGATCCAAAATCTCAGCAGAAGCCCATTTACTACTTTGCTAGGATGAAATCAAGAACCATAATACGGGATTCTGGTACTGTTTCTTCTATGCTGACGCGAGATTCAATCAAGAAGATTACTCTAGCTTTAGGCCAAAAAAGCTCATTTAGTCGAGGCTTTGATAAGATTTTTCACACGCTTTTGGTAAGTTTGAAGGAGAACTCTCCAGTTATTAGGGCTAAAGCTTTGCGAGCAGTTAGCATCATTGTAGAGGCTGATCCAGAGGTATTGGGTGATAAACACGTTCAAACATCCGTTGAAGGTAGGTTCTGTGACAGTGCAATATCTGTTAGAGAAGCAGCATTGGAACTTGTCGGTAGGCATATTGCTTCGCATCCAGATGTGGGTTTTAAGTATTTTGAGAAGATTACAGAGAGAATCAAAGATACTGGAGTGAGTGTTCGAAAACGAGCCATAAAAATTATTCGAGATATGTGCAGCTCAAATGCCAACTTCTCGGAGTTTACAAGAGCCTGCACAGAGATAATTTCTCGTGTTATTGATGATGAATCCAGTATCCAGGATCTTGTTTGCAAAACATTTTATGAGTTCTGGTTTGAGGAGCCTTCTGCTTCACAAACTCAGGTCTTTGGAGATGGCAGTACTGTTCCACTCGAGGTAGCTAAGAAAACAGAGCAAATTGTTGAAATGTTGAAGAGAATGCCCAATAATCAGCTTCTTGTAACTGTAATAAAGCGCAACTTGACACTTGATTTTTTACCACAATCTACAAAAGCAATTGGGGTCAACCCAGTGTCCCTTGTAACTGTTCGTAAGCGTTGTGAGTTGATTTGCAAATGCTTGCTGGAGAAGATATTGCAGGTTGAAGAAATGAACAGTAATGAAGCGGAAAAACATGTGCTTCCGTATGTGCTAGTCTTGCATGCATTTTGTCTTGTGGACCCAACTCTCTGTGCACCAGATTCTAACCCTTCCCAGTTTGTCATTACTTTGCAGCCATATCTGAAGACTCAGGTTGATAATAGCATGGTTGCACAACTACTTGAgagtataatatttataattgatGCTGTGTTGCCATTGCTGCGCAAGTTACCGCTGAATATTGTGGAGGAACTTGAGCAAGATTTGACGCAGATGATTCGCCGACATTCGTTCTTGACAGTTGTCCATGCTTGTATCAAGTGCCTCTGCAGTATGAGTAAGATTGCTGGGAAGGGGGCTACTGCAGTCGAGCATCTTATTCAGGTCTTCTTCAAATGTTTGGAAGATACACAGGCAGTTGTAAACAAGCAGCAAGTCGGGcgatctctcttctctcttggTTTGCTTATTCGTTATGGCAACTGTTTGTTTGCAAGCTCTGGTAATGAACTTGTTGATGTCAAAAGGAGTCTCGGCTTGCTTATGAAGTATCTTGCTGTTGATGATTGTACTCTTCAGGTTAGATCATTGCAGGCACTAGGGTATGTTCTAATTGCAAGGCCTGAATATATGTTAGAAAATGACATTGGAAAGATACTGGAGGGAACATTGTCTAACGTTGCTAATGAACGGATAAAGATTCAAGCATTACAAAACATGTTTGAGTATCTTCTTGATGCTGAAAGCAAAATGGGAACAGACAAAGTTGATGGTAATGTACCTGGTCACTTGGTTGGAGCTGGGCAGAGTGTACCTGTTGCTGCTGGTGCTGGGGATACAAACATATGCGGGGGTATAATTCAGTTGTACTGGGATAATATTTTGGGCAGATGTTTGGATTTGAACGAACATGTTCGACAATCAGCCTTAAAGATTGTTGAAGTTGTGTTGCGCCAAGGTCTTGTTCATCCCATCACCTGTGTTCCACATCTTATAGCACTAGAAACAGATCCTCTGGAGCCAAATTCAAAGTTGGCTCATCACCTCCTAATGAATATGAATGAGAAGTACCCTGCATTTTTTGAAAGCCGATTGGGTGATGGACTTCAAATGTCTTTTATGTTCATGCAATCTATTTGTGTCAGTCCTAATGAAAATGTTGACCACAAGACCCAATCTAAGATCCCTGTTTCTGGAAAAGGGAAGCCCCAGGCCGACTCGCTCACTCAATCAAGAGTTGGCGTTTCTCGAATATACAAGCTCATCCGAGGGAACCGGATATCGAGGAACAAATTTATGTCCTCAATTGTACGAAAATTTGATAATCCAAGATGGAACAAATTTGTAATAGCTTTCTTAATGTACTGCACAGAGGTCCTTGCCTTGCTTCCATTCACTGCACCTGATGAACCACTTTATTTAATCTATGCTATCAACAGAATAGTTCAGGTTAGGGCTGGTCCGCTGGAGGCGAACTTCAAAGCCTGGAGTTCAAGCTTGTTACGAAGTGAGGTTGACGGTACACCTCATGGGAATGGAATGTATCCACAGGCACCAGATGTGCCTATTCATACAACCCATGTCCAGTCAATGGATTTAAATGGCACATTTCAGCAAAATGTAGATGTTCAGCCCTACCTCAATGATATGACATCAGTGGATTTAAATGGAACAAATCACCAATTGCCAGATTATCCTTTATCACATAATAGTAGATCAAAAGTAAAGCTACATGCTGCAGGTTTTGCAGATTCCTTTACCTTCTCAAAAGATGATCTGGAGAAAATTCAGGCCGACTGTTTATCCGCAATTGCATTGCAACTTCTTTTGAAGTTAAAGAGACACCTAAAAATCGTGTATAGTCTCGATGATGCCAGATGTCAGGCTTATTCTCCAAGCGAACCACCAAAACCTGGAGATGTTTTTTCAAAACAGAATGTTCCATTTAATATTGGGGAATCTCAGTTCAGTTTGCCTACATGCCCGCAAGAATTAATACAAAGATATCAGGAGTTTAAGAATGCATTGAAGGAAGACACAGTGGATTATTCACTCTACACAGCAAATATAAAACGGAAGCGACAAACACCCAGAAAAGTTCGGAAATCTGGACCGATGGTAGGTGCTAATATTGATGAGGACGACGATGAGGATTGGGCTGGTGGAATGCGCAATATAAATTTTAGTGGTGGCCGCAGAACTAGCCTTAGAAACTCCAGACAATACTGA	5085	0.4006	MQCCSFSGPVKEKISGSALPEKKLSESSFSVPSQTQKDYNATHSRQLDNFSTNDISTLSSKKSKVKKKAGNGLSIAPDPAELQDASIGRFREFLEDLCSKAESNSDHQDEAVEWLPLPLSDLRTLVNEIMSIREKKLLHLVPVEFLVRLLKVLDHQIHRAEGLSIEDCDNSNSEQVSSLLAALESIHAALAVMAHTDMPKQLYKEEVIERILEFSRHQIMDVMCACDPSYRALYRPSENTALEVDDEENDAEYGSASKKRRTSSKTVKLKKSASSRFSSTVNVILQKLCTVLGLLKDLLLIERLSDSCILQLVKTSISTFLVDNIQLLQLKAIGLLSVIFYLYTQHRTYVLDEMLHLLWKLPHSKRALRNYHIREDEQRQIQMITALLIQLIHCSANLPDTLRQASSGNSVLEVSVDASYPTKCREAVREACCLFWSRVLQRLASVKTQDASELKSVMENLVTDLLTTLNLPEYPASASILEVLCAILINNAGSNSKDFAARSMAIDILGTIAARLKRDAVICSREKFWVLQDLLGENAAPRHYPKDTCCICLGGRIENLFICSGCNRLFHADCLDIKENEVPNRNWYCHMCICSKQLLVLQSYCNSQRKDDVKKNRNVSMDESAFSNHEIVQQLLLNYLQDVTSADDLHIFICWFYLCAWYKNDPKSQQKPIYYFARMKSRTIIRDSGTVSSMLTRDSIKKITLALGQKSSFSRGFDKIFHTLLVSLKENSPVIRAKALRAVSIIVEADPEVLGDKHVQTSVEGRFCDSAISVREAALELVGRHIASHPDVGFKYFEKITERIKDTGVSVRKRAIKIIRDMCSSNANFSEFTRACTEIISRVIDDESSIQDLVCKTFYEFWFEEPSASQTQVFGDGSTVPLEVAKKTEQIVEMLKRMPNNQLLVTVIKRNLTLDFLPQSTKAIGVNPVSLVTVRKRCELICKCLLEKILQVEEMNSNEAEKHVLPYVLVLHAFCLVDPTLCAPDSNPSQFVITLQPYLKTQVDNSMVAQLLESIIFIIDAVLPLLRKLPLNIVEELEQDLTQMIRRHSFLTVVHACIKCLCSMSKIAGKGATAVEHLIQVFFKCLEDTQAVVNKQQVGRSLFSLGLLIRYGNCLFASSGNELVDVKRSLGLLMKYLAVDDCTLQVRSLQALGYVLIARPEYMLENDIGKILEGTLSNVANERIKIQALQNMFEYLLDAESKMGTDKVDGNVPGHLVGAGQSVPVAAGAGDTNICGGIIQLYWDNILGRCLDLNEHVRQSALKIVEVVLRQGLVHPITCVPHLIALETDPLEPNSKLAHHLLMNMNEKYPAFFESRLGDGLQMSFMFMQSICVSPNENVDHKTQSKIPVSGKGKPQADSLTQSRVGVSRIYKLIRGNRISRNKFMSSIVRKFDNPRWNKFVIAFLMYCTEVLALLPFTAPDEPLYLIYAINRIVQVRAGPLEANFKAWSSSLLRSEVDGTPHGNGMYPQAPDVPIHTTHVQSMDLNGTFQQNVDVQPYLNDMTSVDLNGTNHQLPDYPLSHNSRSKVKLHAAGFADSFTFSKDDLEKIQADCLSAIALQLLLKLKRHLKIVYSLDDARCQAYSPSEPPKPGDVFSKQNVPFNIGESQFSLPTCPQELIQRYQEFKNALKEDTVDYSLYTANIKRKRQTPRKVRKSGPMVGANIDEDDDEDWAGGMRNINFSGGRRTSLRNSRQY	1694

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu06g02227	1694	Pfam	Sister chromatid cohesion C-terminus	1235	1433	IPR024986	-
	Tsu06g02227	1694	ProSitePatterns	Zinc finger PHD-type signature.	549	592	IPR019786	-
	Tsu06g02227	1694	SMART	PHD_3	548	593	IPR001965	-
	Tsu06g02227	1694	SUPERFAMILY	FYVE/PHD zinc finger	543	600	IPR011011	-
	Tsu06g02227	1694	SUPERFAMILY	ARM repeat	692	1314	IPR016024	-
	Tsu06g02227	1694	Pfam	HEAT repeat associated with sister chromatid cohesion	741	782	IPR026003	-
	Tsu06g02227	1694	ProSiteProfiles	Zinc finger PHD-type profile.	546	595	IPR019787	-
	Tsu06g02227	1694	MobiDBLite	consensus disorder prediction	1	46	-	-
	Tsu06g02227	1694	MobiDBLite	consensus disorder prediction	1680	1694	-	-
	Tsu06g02227	1694	MobiDBLite	consensus disorder prediction	1646	1694	-	-
	Tsu06g02227	1694	CDD	PHD_SF	548	592	-	-
	Tsu06g02227	1694	SUPERFAMILY	ARM repeat	58	859	IPR016024	-
	Tsu06g02227	1694	MobiDBLite	consensus disorder prediction	21	46	-	-
	Tsu06g02227	1694	PANTHER	NIPPED-B-LIKE PROTEIN DELANGIN SCC2-RELATED	20	1691	IPR033031	GO:0003682\|GO:0010468\|GO:0061780
	Tsu06g02227	1694	PANTHER	EXPRESSED PROTEIN-RELATED	20	1691	-	-
	Tsu06g02227	1694	Gene3D	-	720	1194	IPR011989	-
	Tsu06g02227	1694	Gene3D	Zinc/RING finger domain, C3HC4 (zinc finger)	537	632	IPR013083	-

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu06g02227	547	594	PHD Transcription Factor Family	AT5G36670	47.917	2.03e-06	50.8

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu06g02227	K06672		-	gmx:100792021	2637.06

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu06g02227	06	28043994	28057542	Tsu06g02227	06	28043994	28057542	ECH