LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu06g02223	ATGGCAGTCATTGCATTAAAGTGTCCATCCATTGAAGTAGTGGTCGTCGATATCTCGAAATCGCGCATTGCAGCATGGAACAGTGATAAGCTTCCTATCTATGAGCCAGGTCTTGATGACGTAGTAAAGAAATGTCGCGGCAAGAATCTTTTCTTCAGCACTGAAGTTGAGAAACATGTCTATGAAGCCGACATAGTGTTTGTATCCGTCAACACACCGACAAAAACTCGCGGTCTTGGGGCTGGAAAAGCAGCCGATTTAACATATTGGGAGAATGCGGCTCGGATGATTGCCGATGTTTCCAAGTCTGACAAAATTGTGGTAGAGAAATCAACTGTTCCTGTTAAAACTGCTGAAGCTATAGAGAAAATTATGACACACAATGCAAAAAGTATCAAATTTCAGATTCTGTCAAACCCGGAATTTCTCGCCGAGGGAACTGCAATTCAAGACCTTTTCAATCCAGACAGAGTTCTCATCGGAGGCAGAGAAACCCCGGAAGGCGAAAAAGCAATTCAAACGTTGAAAAGTGTTTATTCTCAATGGATTCCAGAGGGAAAAATCTTGACCACAAATCTTTGGTCAGCAGAACTTTCTAAGTTAGCTGCTAATGCCTTCTTAGCTCAAAGGATTTCATCCGTCAATGCATTGTCAGCACTTTGCGAAGGGACCGGCGCAAATGTTAACCAAGTTTCCTACGCAGTTGGTACCGACACAAGAATCGGACCAAAGTTTTTGAATGCAAGCGTCGGTTTCGGCGGTTCTTGCTTCCAAAAAGATATCTTAAACCTTGTTTACATTTGTGAGTGTAATGGTTTACCAGAAGTTGCTGAATATTGGAAACAAGTTATCAAGATCAACGATTATCAGAAGAGTCGGTTTGTGAACCGGGTAGTGGCATCGATGTTTAACACGGTTGCTAACAAAAAGATAGCTATATTAGGATTTGCATTCAAGAAGGATACCGGTGATACACGCGAGACGCCAGCTATTGATGTGTGTAAAGGGCTACTCGGTGATAAAGCGCGTGTGAGTATATTCGATCCGCAGGTAACTGAAGATCAAATACAAAGGGATTTGTggatgaataaatttgattgggATCATCCTATACATTTGCAGCCAACTAGTACTCCTTCAAATGAGAAGAATGTGAGTGTGGTTTGGGATGCTTATGAAGCAACAAAAGATGCAGATGGTGTTTGCATATTAACTGAATGGGACGAGTTTAAGAAACTTGATTATCAGAAGATTTATGATAATATGAGAAAACCAGCATTTGTTTTTGATGGAAGGAATGTTGTTGATTGTGATAAGCTACGTGAGATTGGTTTCATTGTTTATTCAATTGGTAAGCCACTTGATCCATGGCTTAAAGATATGCCAGCTGTGGCTTAA	1398	0.4049	MAVIALKCPSIEVVVVDISKSRIAAWNSDKLPIYEPGLDDVVKKCRGKNLFFSTEVEKHVYEADIVFVSVNTPTKTRGLGAGKAADLTYWENAARMIADVSKSDKIVVEKSTVPVKTAEAIEKIMTHNAKSIKFQILSNPEFLAEGTAIQDLFNPDRVLIGGRETPEGEKAIQTLKSVYSQWIPEGKILTTNLWSAELSKLAANAFLAQRISSVNALSALCEGTGANVNQVSYAVGTDTRIGPKFLNASVGFGGSCFQKDILNLVYICECNGLPEVAEYWKQVIKINDYQKSRFVNRVVASMFNTVANKKIAILGFAFKKDTGDTRETPAIDVCKGLLGDKARVSIFDPQVTEDQIQRDLWMNKFDWDHPIHLQPTSTPSNEKNVSVVWDAYEATKDADGVCILTEWDEFKKLDYQKIYDNMRKPAFVFDGRNVVDCDKLREIGFIVYSIGKPLDPWLKDMPAVA	465

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu06g02223	465	PIRSF	UDPglc_GDPman_dh	1	452	IPR017476	GO:0016616
	Tsu06g02223	465	Pfam	UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain	312	436	IPR014027	GO:0016616\|GO:0051287
	Tsu06g02223	465	Pfam	UDP-glucose/GDP-mannose dehydrogenase family, central domain	194	288	IPR014026	GO:0016616\|GO:0051287
	Tsu06g02223	465	SUPERFAMILY	NAD(P)-binding Rossmann-fold domains	9	198	IPR036291	-
	Tsu06g02223	465	SUPERFAMILY	UDP-glucose/GDP-mannose dehydrogenase C-terminal domain	298	448	IPR036220	-
	Tsu06g02223	465	SMART	UDPG_MGDP_dh_C_a_2_a	312	437	IPR014027	GO:0016616\|GO:0051287
	Tsu06g02223	465	Gene3D	-	1	192	-	-
	Tsu06g02223	465	SUPERFAMILY	6-phosphogluconate dehydrogenase C-terminal domain-like	194	293	IPR008927	-
	Tsu06g02223	465	PIRSF	UDPglc_DH_euk	1	465	IPR028356	GO:0003979
	Tsu06g02223	465	Gene3D	-	225	462	-	-
	Tsu06g02223	465	Gene3D	-	193	224	-	-
	Tsu06g02223	465	PANTHER	UDP-GLUCOSE DEHYDROGENASE/UDP-MANNAC DEHYDROGENASE	1	465	IPR028356	GO:0003979
	Tsu06g02223	465	PANTHER	UDP-GLUCOSE 6-DEHYDROGENASE 3	1	465	-	-
	Tsu06g02223	465	TIGRFAM	NDP-sugDHase: nucleotide sugar dehydrogenase	10	433	IPR017476	GO:0016616
	Tsu06g02223	465	Pfam	UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain	2	170	IPR001732	GO:0016616\|GO:0051287

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu06g02223	Tsu-Chr6	28021906	28023303	Dispersed/Wgd

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu06g02223	K00012		-	gmx:100810907	885.174

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Tsu06g02223	06	28021906	28023303	Tsu04g00217	04	1971158	1973932	PCT