Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02169 ATGGCGACTGCGAAACCTCAACGAACTCCACAGGAAGTGGAAGACATAATCATCCGCAAAATCTTCCATGTAACCATCACCGGAGAATCAACAACCACCACCGGAGTAACCGATTCGAGAATCGTTTATCTCGAACTAACCGCCGCAGAGATTCTCAGCGAAGGCAAAGACCTTCTCCTTTCTCGCGATGTTATGGAACGAGTCCTAATCGATCGTCTTTCCGGCGATTTCCCCACCGCAGGTGCCGAAAATTCACCTTTTCAGTACCTTCTCGGTTGTTACAATCGAGCTCACGACGAAGGGAAGAAAATCGTGAACATGAAGGATAAAAACCTTAGGTCAGAGATGGAAACTGTTGTGAAACAAGCGAAGAAGCTTTGTGTTTCGTATTGTAGAATTCATCTCGCGAATCCTGAGCTATTCGCGagtcaaaattcaaattctgGTACCGGAAGGTCACCGTTGTTGCCGTTGATTATATCGGAGTGTGGTGGAGGCGGTGGAATGGGGGTTTTCGGTAGTGGTAGTGATACTGGAGGAGTGAAAAGTCCTCCAGGGTTTTTAGATGAGTTTTTTAGGGATCCTGATTTTGAAAGTTTGGATAGAATTTTGAAAGGGTTGTATGAGGAATTAAGAGGGAATGTGATGAAAATTTCTGTTCTTGGTAATTTTCAGGATTCTCTTAGGGCTTTGTTGTTTTTGGTTAGGTTACCTGTTGGTGCTAAGTCTCTTGTGAGTCATGAATGGTGGATTCCTAAAGGTGTTTATATGAATGGTCGCGCTATTGAAATGACTAGCATTTTGGGTCCTTTTTTCCATATCAGTGCTCTTCCTGATCAAACCTTCTTCAAGAGTAATCCGGATATTGGGCAGCAGTGCTTTTCTGATGCTTCAACTCGGCGGCCATCTGATTTATTATCTTCATTCACCACCATTAAAACTGTCATGAATACCTTATATGATGGCCTATCTGAAGTACTCCGCAACCTCCTTAGAAGTACAGAGACTCGTGAAAATGTACTTGAGTATCTTGGAGAGGTGATCAATCTAAATGCATCTAGGGCTCATATACAGGTTGATCCGATTACTTGTGCAAGTTCAGGCATGTTTGTAAATCTCAGTGCAGTCATGCTTCGCCTCTGCGAACCATTTTTAGATGCAAATCTAACAAAAAGGGATAAAATTGATGCCAAATATGTACACCACTCAAACCGTTTGAAGCTAAGTGGTTTGACTGCCCTTCATGCGTCATCAGAAGAAGTTACTGAATGGCTTGATAGTAAAAACCCAGCTAAGGCAGGGGAAATGAATCAATGTAATGATGGTGAGAAACGTCTGAAACAATCTCAAGAGGCCAGCAGTTCTGGTAGTAATAATGCCAGTgcaaaatattcatttatatGTGAATGCTTCTTTATGACTGCAAGAGTGCTCAACTTGGGGCTTTTAAAAGCATTTTCTGACTTCAAACACTTAGTTCAGGATATTTCTAGAAGTGAAGATACTCTTGCCACACTTAAAAACATGCAGGGACAGTCACCTTCTCCTCAATTGGAATTGGATATAACTCGACTTGAGAAAGAACTTGAGTTATATTCACAGGAAAAACTTTGTTATGAAGCACAGATATTGAGGGATAACACACTTATTCAGAATGCACTTTCGTTCTACCGCTTGATGATTGTCTGGTTGGTTGGCTTGGTTGGTGGATTTAAGATGCCTCTACCACCAACTTGCCCAATGGAATTTTCTGCTATGCCTGAACATTTTGTAGAAGATGCTATGGAACTTCTAATATTTGCTTCCCGGATTCCAAAGGCCTTAGATGGAGTTGTGCTGGATGAGTTTATGAACTTCATAATTATGTTCATGGGCAGCCCTGATTTTATCAAAAACCCATATCTGAGAGCCAAGATGGTCGAAGTTCTGAACAACTGGATGCCTCGTAGGAGTGGCTCATCTACTACAGCTACTCTATTTGAAGGGCATCAACTGTCTCTTGAGTATCTTGTGAGGAATCTTCTGAAACTTTATGTTGACATTGAGTTCACTGGTTCTCACACACAGTTCTACGACAAGTTTAACATCCGCCATAATATTGCTGAACTCCTTGAATACCTGTGGAATGTCCCCAGTCATCGTAGTGCTTGGAGACAGATTGCTAAAGAGGAAGAAAAGGGTGTCTATCTCAATTTCTTAAACTTTCTCATTAATGATAGTATTTATCTTCTCGATGAAAGTCTGAACAAAATTCTCGAGCTAAAAGAATTGGAGGCTGAGATGTCAAATACTGCCGAGTGGGAGCGACGGCCAGTTCAAGAGAGGCAGGAGAGGACCCGGTTATTCCACTCTCAAGAAAATATTATTCGGATAGATATGAAGTTGGCCAATGAAGATGTCAGTATGCTTGCATTTACTTCAGAGCAGATTACTGCTCCATTCCTGCTTCCTGAGATGGTTGATAGAGTGGCCAGCATGCTCAATTACTTTCTACTGCAATTGGTGGGCCCCCAAAGAAAATCACTCAGTCTGAAAGATCctgaaaaatatgaatttcGTCCAAAGCATTTGCTTAAACAGATTGTGCATGTATATGTTCATCTGGCTAGAGGCGACACAAATTCCATCTTCCCATCTGCTATATCAAAGGATGGCCGCTCATACAATGATCAGTTGTTTAGCTCTGCTGCAGACGTCCTTCGTAGAATTGGCGAGGATGGAAGAATCATACAGGAATTTATTCAGCTTGGTGCTAAGGCCAAAGTTGCTGCTTCAGAGGCCATGGATGCTGAAGCTACTCTAGGAGAAATACCAGATGAATTCCTGGATCCAATTCAATATACTTTGATGAAGGATCCAGTCATCTTGCCTTCGTCAAAGACCACGGTTGATCGTCCTGTCATCCAGAGGCATCTTCTCAGTGATAGTGTAACACCTCTGAACCcattttattactattttcatCCTAAAATTCTGAAAAGAGGTTCACTGGTTTATGCTTTTCTATATGGTTATTTGTGCAGACCGATCCATTCAACCGTTCTCATCTGA 3051 0.4123 MATAKPQRTPQEVEDIIIRKIFHVTITGESTTTTGVTDSRIVYLELTAAEILSEGKDLLLSRDVMERVLIDRLSGDFPTAGAENSPFQYLLGCYNRAHDEGKKIVNMKDKNLRSEMETVVKQAKKLCVSYCRIHLANPELFASQNSNSGTGRSPLLPLIISECGGGGGMGVFGSGSDTGGVKSPPGFLDEFFRDPDFESLDRILKGLYEELRGNVMKISVLGNFQDSLRALLFLVRLPVGAKSLVSHEWWIPKGVYMNGRAIEMTSILGPFFHISALPDQTFFKSNPDIGQQCFSDASTRRPSDLLSSFTTIKTVMNTLYDGLSEVLRNLLRSTETRENVLEYLGEVINLNASRAHIQVDPITCASSGMFVNLSAVMLRLCEPFLDANLTKRDKIDAKYVHHSNRLKLSGLTALHASSEEVTEWLDSKNPAKAGEMNQCNDGEKRLKQSQEASSSGSNNASAKYSFICECFFMTARVLNLGLLKAFSDFKHLVQDISRSEDTLATLKNMQGQSPSPQLELDITRLEKELELYSQEKLCYEAQILRDNTLIQNALSFYRLMIVWLVGLVGGFKMPLPPTCPMEFSAMPEHFVEDAMELLIFASRIPKALDGVVLDEFMNFIIMFMGSPDFIKNPYLRAKMVEVLNNWMPRRSGSSTTATLFEGHQLSLEYLVRNLLKLYVDIEFTGSHTQFYDKFNIRHNIAELLEYLWNVPSHRSAWRQIAKEEEKGVYLNFLNFLINDSIYLLDESLNKILELKELEAEMSNTAEWERRPVQERQERTRLFHSQENIIRIDMKLANEDVSMLAFTSEQITAPFLLPEMVDRVASMLNYFLLQLVGPQRKSLSLKDPEKYEFRPKHLLKQIVHVYVHLARGDTNSIFPSAISKDGRSYNDQLFSSAADVLRRIGEDGRIIQEFIQLGAKAKVAASEAMDAEATLGEIPDEFLDPIQYTLMKDPVILPSSKTTVDRPVIQRHLLSDSVTPLNPFYYYFHPKILKRGSLVYAFLYGYLCRPIHSTVLI 1016
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02169 1016 MobiDBLite consensus disorder prediction 431 460 - -
Tsu06g02169 1016 Coils Coil 515 542 - -
Tsu06g02169 1016 Coils Coil 1015 1016 - -
Tsu06g02169 1016 ProSiteProfiles U-box domain profile. 936 972 IPR003613 GO:0004842|GO:0016567
Tsu06g02169 1016 Pfam Ubiquitin elongating factor core 268 920 IPR019474 GO:0000151|GO:0006511|GO:0016567|GO:0034450
Tsu06g02169 1016 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 936 984 IPR013083 -
Tsu06g02169 1016 PANTHER UBIQUITINATION FACTOR E4 1 980 IPR045132 GO:0000151|GO:0030433|GO:0034450
Tsu06g02169 1016 SMART Ubox_2 940 999 IPR003613 GO:0004842|GO:0016567
Tsu06g02169 1016 SUPERFAMILY RING/U-box 929 984 - -
Tsu06g02169 1016 Pfam U-box domain 937 981 IPR003613 GO:0004842|GO:0016567
Tsu06g02169 1016 PANTHER - 1 980 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02169 1 981 U-box Gene Family AT5G15400 76.205 0.0 1549
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02169 K10597 - gmx:100806175 1655.19
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02169 06 27202931 27211002 Tsu06g02169 06 27202931 27211002 ECH