Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02164 ATGGCTTGTGCAACAAATTTTATTAGTAGTTGTTCCAAATTTTGGCCGAAGCTAGAAGACTTGCTTCGCCTTGTTGTTGATTCGCTTCCCCTCTCCTATCGTTTTGTTCTTAATGTTGATGAGAGTTGTCTCGGTGTGTCGGACAGGGCTGGAACAGGCGGGTTAATTAGAAGAGGCAACGACTCTTGGGTGACCGGATTCAGTTGCTACATTGCCATATCTAATAATATCTATGTTGAACTCATGGCCATTTATCAAGAGTTGACCTTGGCTACGAACTATGGTTCTAATTTCAAAGCCTATGAATGGATTCCACTTCTATGCTCTTCTGAAAGATTAGGGTTATTCGTCTCTCTTCACCAATTTCTTCAATTCAAGATGGAATCACAAATTAAGAAAGCTCAAGTTCTCAAAGTTATCGGACGTACTGGATCTCGAGGACAGGTCACTCAAGTTAGAGTGATGTTTATGGAGGATCAGAATCGCCACATCATGAGGAATGTGAAAGGACCTGTTAGAGAAGGAGACATTCTCACCCTACTTGAGTCCGAGAGAGAAGCAAGAAGACTCCGTTAG 576 0.4219 MACATNFISSCSKFWPKLEDLLRLVVDSLPLSYRFVLNVDESCLGVSDRAGTGGLIRRGNDSWVTGFSCYIAISNNIYVELMAIYQELTLATNYGSNFKAYEWIPLLCSSERLGLFVSLHQFLQFKMESQIKKAQVLKVIGRTGSRGQVTQVRVMFMEDQNRHIMRNVKGPVREGDILTLLESEREARRLR 191
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02164 191 CDD S1_S28E 132 191 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu06g02164 191 Gene3D - 124 191 IPR012340 -
Tsu06g02164 191 Hamap 30S ribosomal protein S28e [rps28e]. 127 191 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu06g02164 191 Gene3D - 33 112 IPR036397 GO:0003676
Tsu06g02164 191 PANTHER 40S RIBOSOMAL PROTEIN S28 127 191 - -
Tsu06g02164 191 CDD RNase_H_like 37 95 IPR044730 -
Tsu06g02164 191 Pfam Ribosomal protein S28e 130 190 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu06g02164 191 PANTHER 40S RIBOSOMAL PROTEIN S28 127 191 IPR000289 GO:0003735|GO:0005840|GO:0006412
Tsu06g02164 191 SUPERFAMILY Nucleic acid-binding proteins 127 191 IPR012340 -
Tsu06g02164 191 ProSitePatterns Ribosomal protein S28e signature. 182 190 IPR028626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02164 Tsu-Chr6 27164292 27167524 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02164 127 191 Cytoplasmic Ribosomal Protein Gene Family AT5G03850 83.077 1.55e-30 105
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02164 K02979 - gmx:100788626 90.5077