Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02149 ATGATTCATACTTCTTGGGCAAACTGTTATATTTTGCAGGTTATCTCTGGGAAATTATATGCTGGACCGGAAGTAGATGTTTGGAGCTGTGGTGTAATTTTATACGCACTTCTCTGTGGTACTCTTCcgtttgatgatgaaaatatTCCCAACCTCTTCAAGAAAATAAAGGGTGGGATATATACTCTTCCTAGTCATCTATCTCCTGGTGCCAGAGATTTGATACCGAGGCTGCTTGTGGTGGATCCCATGAAAAGGATGACCATACCTGAGATACGCCAACACCCATGGTTCCAAGTTCATCTGCCGCGTTATTTAGCGGTGCCACCACCAGATACACTGCAACAGGccaaaaagATTGATGAGGAGATTCTTCAGGAGGTGGTTAATAGAGGATTTGACAGGGAACAATTGATTGCGTCCCTTAGAAGCAGGGTGCAAAATGAGGGTACTGTAacttattatttgttattggACAATCGTTATCGAGTTTCCACTGGCTATCTTGGAGCTGAGTTTCAAGAGACAATGGATTCTAGTTTGAACCGTATCCACTCCAGTGAAGTTGTTTCTCCAGTTGGTGGGCACCGGTTTTCAGGGTATATGGATTATCAAGGTGTAGGAATGAGGCAACAGTTCCCTGTGGAGAGAAAATGGGCCCTTGGGCTTCAGTCTCGTGCCCAACCTCGTGAAATAATGGCTGAAGTCCTTAAAGCTCTGCAAGAATTGAATGTCTGTTGGAAAAAAATTGGACACTATAACATGAAGTGCAGATGGGCTGTGGTCATCCCTGGTCATCATGGAGGAATGGTTAACAATTCTGTGCATGGTAATAATTACCTTGGAGATGGCAGCATTATTGAGAATGAAGCTGTTTCTAAGTCAAGTGTAGTCAAGTTTGAACTACAGCTCTACAAAACTCAAGAGAAATATCTGCTTGATCTCCAAAGGGTTGAGGGTGCCCATTTCCTTTTCTTGGATCTTTGTGCCGCCTTCCTTGCGCAGCTTCGTGTTCTTTAG 1020 0.4225 MIHTSWANCYILQVISGKLYAGPEVDVWSCGVILYALLCGTLPFDDENIPNLFKKIKGGIYTLPSHLSPGARDLIPRLLVVDPMKRMTIPEIRQHPWFQVHLPRYLAVPPPDTLQQAKKIDEEILQEVVNRGFDREQLIASLRSRVQNEGTVTYYLLLDNRYRVSTGYLGAEFQETMDSSLNRIHSSEVVSPVGGHRFSGYMDYQGVGMRQQFPVERKWALGLQSRAQPREIMAEVLKALQELNVCWKKIGHYNMKCRWAVVIPGHHGGMVNNSVHGNNYLGDGSIIENEAVSKSSVVKFELQLYKTQEKYLLDLQRVEGAHFLFLDLCAAFLAQLRVL 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02149 339 Gene3D Kinase associated domain 1, KA1 222 337 - -
Tsu06g02149 339 Pfam Protein kinase domain 14 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02149 339 Gene3D Transferase(Phosphotransferase) domain 1 11 179 - -
Tsu06g02149 339 ProSiteProfiles Ubiquitin-associated domain (UBA) profile. 119 159 IPR015940 -
Tsu06g02149 339 CDD UBA_SnRK1_plant 120 160 - -
Tsu06g02149 339 SMART uba_6 121 158 IPR015940 -
Tsu06g02149 339 PANTHER SERINE/THREONINE KINASE 13 338 - -
Tsu06g02149 339 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 13 338 - -
Tsu06g02149 339 ProSiteProfiles Kinase associated domain 1 (KA1) profile. 291 338 IPR001772 -
Tsu06g02149 339 Pfam Kinase associated domain 1 297 338 IPR001772 -
Tsu06g02149 339 SUPERFAMILY Protein kinase-like (PK-like) 15 116 IPR011009 -
Tsu06g02149 339 ProSiteProfiles Protein kinase domain profile. 1 98 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02149 339 SUPERFAMILY KA1-like 155 338 IPR028375 -
Tsu06g02149 339 Pfam UBA/TS-N domain 120 156 IPR015940 -
Tsu06g02149 339 CDD AMPKA_C 216 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02149 Tsu-Chr6 26975229 26979916 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02149 13 127 CBL-interacting serine-threonine protein kinases AT5G10930 44.348 6.35e-24 100
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_AMPK Tsu06g02149 Pkinase 2.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02149 K07198 - gmx:547544 580.482