Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02146 ATGGCAAGAAAGAGAAAGGTTTCTGAAGTAGTTGAAGAAGGAAGCATGGTTTGGGATGAAATGATGAAAGAAGCTGCATCACTTGGAGGAGCAAGGCGAGTCCGAAAGAGATTTGTCGGTGTTCGACAAAGGCCATCGGGTAGATGGGTTGCCGAGATTAAAGATACTATTCAAAAGATAAGAGTTTGGTTAGGAACTTTTGATACAGCTGAAGAAGCTGCAAGAGCTTATGATGAAGCTGCTTGTTTGCTTCGCGGCGCAAATACTCGGACGAATTTTTGGCCTTGTTCTCAATCTTCAACTAGTCCTGCTCTTTCTTCAAAGATCACTAATCTTCTACTTCAAAGACTTAAAGAAaggaatatgaatatgaataacTCTTGTTCATCCTTTTCTTCGTCGAAATTTACTTCCTTGTTGGAGAGTTCAGGGGAGCGTCGGGAGCAACAACGAGTCAATGATCAGGATCATCAGGAGATCGAACAAGTTGAGGCCTATGGAGAAGGATCAAAAGATTTTTCAATTGATCAATTCACTGATTTCCTTAATGATCATGTTGATTATACAACAATCAACAATGAAATCATCAATGACACTGCACAATTCGATTACATATCGAGTAGTTTTGAATCATGTTTAACCGAAAACAACGGTTTCAACAAGGAAGATGATATGAATATGGAATCTAAATCAAACAATGTGACACAAACTTCAAGTGGTGATAGTAATTCAGAAGATAGTGAAGAAGAAGTTAATAATGATGTTCCCGATTTTCGGTTCCTCGATGATATTGCTCCAACTAGTTACTATTCTCCATTTGAAATTGCTGAAGAAATGGAAGAACAAATGGAGACAGAAAGTTTTTGTGATGAGCCTTCAATGATTAGAGCTGTTATGAAAAGAATGAAATATGAAAGAAAATTTTCAGCTTCTCTTTATGCATTCAATGGAATACCTGAATGCTTGAAGTTGAAACTTGAATCATCAGGAAACAATAATGGAAGAGGAATTTCTGATCAATTGAACAATCTCAAAGAAGCATGTAGCAAGAATAAActtgagaagaagaaagaagagaaagatgaagaaaacAATGAAAGTTCAATTGAGATGGAATCTTCATCTTTGTGTAGGAATGATAGTGATATTGTCCTTTGGAATTCACTTGATCTTCCTCCTATTTGTTTTGTTaacttacttgaaaatggttcaTTCAATTAG 1221 0.3423 MARKRKVSEVVEEGSMVWDEMMKEAASLGGARRVRKRFVGVRQRPSGRWVAEIKDTIQKIRVWLGTFDTAEEAARAYDEAACLLRGANTRTNFWPCSQSSTSPALSSKITNLLLQRLKERNMNMNNSCSSFSSSKFTSLLESSGERREQQRVNDQDHQEIEQVEAYGEGSKDFSIDQFTDFLNDHVDYTTINNEIINDTAQFDYISSSFESCLTENNGFNKEDDMNMESKSNNVTQTSSGDSNSEDSEEEVNNDVPDFRFLDDIAPTSYYSPFEIAEEMEEQMETESFCDEPSMIRAVMKRMKYERKFSASLYAFNGIPECLKLKLESSGNNNGRGISDQLNNLKEACSKNKLEKKKEEKDEENNESSIEMESSSLCRNDSDIVLWNSLDLPPICFVNLLENGSFN 406
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02146 406 CDD AP2 36 93 IPR001471 GO:0003700|GO:0006355
Tsu06g02146 406 Coils Coil 341 370 - -
Tsu06g02146 406 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 8 333 - -
Tsu06g02146 406 PRINTS Ethylene responsive element binding protein signature 38 49 IPR001471 GO:0003700|GO:0006355
Tsu06g02146 406 PRINTS Ethylene responsive element binding protein signature 60 76 IPR001471 GO:0003700|GO:0006355
Tsu06g02146 406 SMART rav1_2 37 100 IPR001471 GO:0003700|GO:0006355
Tsu06g02146 406 Gene3D AP2/ERF domain 36 94 IPR036955 GO:0003700|GO:0006355
Tsu06g02146 406 SUPERFAMILY DNA-binding domain 37 94 IPR016177 GO:0003677
Tsu06g02146 406 Pfam AP2 domain 37 86 IPR001471 GO:0003700|GO:0006355
Tsu06g02146 406 MobiDBLite consensus disorder prediction 349 364 - -
Tsu06g02146 406 MobiDBLite consensus disorder prediction 216 257 - -
Tsu06g02146 406 PANTHER AP2/ERF DOMAIN TRANSCRIPTION FACTOR 8 333 - -
Tsu06g02146 406 MobiDBLite consensus disorder prediction 349 373 - -
Tsu06g02146 406 ProSiteProfiles AP2/ERF domain profile. 37 94 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02146 Tsu-Chr6 26927390 26928610 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02146 35 113 AP2-EREBP Transcription Factor Family AT5G19790 73.418 8.84e-33 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu06g02146 AP2 7.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02146 K09286 - gmx:100790398 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02146 06 26927390 26928610 Tsu06g02146 06 26927390 26928610 ECH