Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02139 ATGTTATTACTTATTTGGTTCTTCATATTTTCCTATACTACAAGAATTTCCACTTCACTAGACACTTTAGCAGTTGGTGAATCTATCAAAGATGGTGAGACTTTAGTTTCATCAAATGGAATTATTGGAGTAGGTTTCTTTAGCCCTCAAAGTTCAACACAAAGATTAAGATACTTAGGTATATGGTATAGGAATGTGTCACCTTTAACAGTTGTTTGGGTAGCAAACAATGAAAAACCTTTACAAGATAAATCAGGAGTTTTGAGACTCAATGAAAAGGGGATTCTTTTGCTTCTCAATGATGTAAATAGTACTATTTGGTCATCTAAGATATCAAGCATAGAAGAAAATAGTACTCCAATTGCTCAGATTTTGGATACTGGAAATTTTGTAGTGAAAAATAGAAGGGAAGTTGACAAAGACAGGTTTTTGTGGCAAAGTTTTGATTATCCCGGTGATACGTTGATGCCAGGAATGAAGCTTGGATGGGACTTAGAAACTGGTCTAGAAAGATATATATCATCTTGGAAAAGTGTTGATAATCCTGCTAAGGGAGAAATCACTACAAGAGTTGATCTAAGAGGATATCCACAAGTAATTATGTTCAATGGATCTTCTCATATAATATTTAGATCAGGGCCATGGAATGGTCAATCTTTAGCTGGATCACCAGGTTCAAATTCTGCACTGTCACAAATTTTTGTCTTCAATGAAAAAGAAGTGTACTATGAGTATCAAATTCTTGACAGTTCAATTTTCAGTGTTCTTAAATTGATGCCTTATGGACCTGCACAAAATTGGTTTTGGACAAGTCAATCAAGAAACCGGCAAGTTTTGCCAACAAGCTCAGATGAATGTCAAATATATGCATTTTGTGGTGCAAATTCTGTATGTACTATTGATGATAATAACCATCCAAATTGTGAATGTATGAAAGGATATGCTCCGAAATTTCCTGAAGAGTGGAATTTAGCATTTTGGTCGAACGGTTGTATTCGAACAAAGAAACCTGGTTATACAGACGGTTTCTTGAAGTATACACTCGTGAAAGTGCCGGACACATCTTCgtcatggtttagtaagaagTTGAATCTTGAGGAATGCAGGAATTCGTGTTTGAGAAATGGTTCGTGTGCAGCGTATGCAAATATTGATATCCGTAACGGAGGAAGTGGATGCCTGATATGGTTTAATAATTTGATGGATGTGAGGAAATTCTCTAAATGGGGACAAGATCTTTATGTCAGAGTCTCTCCTTCAGAATTAGATCAACATGCAGCAGTTGGACACAGAAACAACAAGAATAAGATAATAGGAATCACATTTGGTGTGATTATCTTTggattaattacatttttatccaTATTGACTATTAAAAATCCAGGGATTGCAAGAAAGTTTTGCTGCACAATTTGCAATACTAAACCAAGGAAGGAAGACCTTGATTTAACAACATTCAATTTGTCCGTCTTGGTTAAAGCCACCGACAACTTTTCGAGCATTAACAAACTCGGCGAAGGTGGTTTTGGACCCGTATACAAGggCACAATGGTAGATGGGCAAGAGATAGCAGTGAAAAGGCTTTCGAAGAAGTCAGGACAAGGGTTGCAGGAATTCAAAAATGAAGTGGCATTGATCGCCAAACTTCAACACCGTAATCTTGTCAAGCTTCTCGGATGCTGCATCCAAGGAGGAGAAACAATGTTGATCTATGAATACATGCCGAACAAAAGTTTAGACTACTTTATTTTTGATGAAATCAAACGGATGTCACTAGACTGGATTAAGCGTTTCAACATTATCAGCAGCGTTGCTTGGGGACTTCTTTATCTTCACCGTGACTCTAGACCTTTGGTTTGGCTCGAAcattttttggagatcaagtCGAGGCAAACACAAATAGGGTGGCCGGAACATACGGTTACATGCCTCCGGATGTCAGGGAAGAAGAACACAAAATTTTCTGATCCAGAATATTACCACAATCTTCTTGGATATGCGTGGAGATTATGGTCAGAAGAAAGGGCATTGGAACTATTGGATGAAAGTTTAGGGCAACAATGTACACCTTCTGAAGTCATTCGATGTGTACAAGTGGGGTTATTATGCGTTCAACAAAGACCGGAAGATAGGCCAGACATTTCATCCGTGGTTCTAATGCTAAATGGCGAAAAATTATTGCCAAAACCAAAGGTTCCTGGCTTTTACATTGAAAACAATGTAAAACCTGAATTAGATTCTTCGACTACAAATCATAATCTATTTTCGGCTAGTGAATCCATCACAGAGTTAGTTGCAAGATAG 2304 0.3663 MLLLIWFFIFSYTTRISTSLDTLAVGESIKDGETLVSSNGIIGVGFFSPQSSTQRLRYLGIWYRNVSPLTVVWVANNEKPLQDKSGVLRLNEKGILLLLNDVNSTIWSSKISSIEENSTPIAQILDTGNFVVKNRREVDKDRFLWQSFDYPGDTLMPGMKLGWDLETGLERYISSWKSVDNPAKGEITTRVDLRGYPQVIMFNGSSHIIFRSGPWNGQSLAGSPGSNSALSQIFVFNEKEVYYEYQILDSSIFSVLKLMPYGPAQNWFWTSQSRNRQVLPTSSDECQIYAFCGANSVCTIDDNNHPNCECMKGYAPKFPEEWNLAFWSNGCIRTKKPGYTDGFLKYTLVKVPDTSSSWFSKKLNLEECRNSCLRNGSCAAYANIDIRNGGSGCLIWFNNLMDVRKFSKWGQDLYVRVSPSELDQHAAVGHRNNKNKIIGITFGVIIFGLITFLSILTIKNPGIARKFCCTICNTKPRKEDLDLTTFNLSVLVKATDNFSSINKLGEGGFGPVYKGTMVDGQEIAVKRLSKKSGQGLQEFKNEVALIAKLQHRNLVKLLGCCIQGGETMLIYEYMPNKSLDYFIFDEIKRMSLDWIKRFNIISSVAWGLLYLHRDSRPLVWLEHFLEIKSRQTQIGWPEHTVTCLRMSGKKNTKFSDPEYYHNLLGYAWRLWSEERALELLDESLGQQCTPSEVIRCVQVGLLCVQQRPEDRPDISSVVLMLNGEKLLPKPKVPGFYIENNVKPELDSSTTNHNLFSASESITELVAR 767
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02139 767 Gene3D Hepatocyte Growth Factor 336 414 - -
Tsu06g02139 767 CDD EGF_CA 284 314 - -
Tsu06g02139 767 SMART blect_4 26 151 IPR001480 -
Tsu06g02139 767 ProSiteProfiles EGF-like domain profile. 282 320 IPR000742 -
Tsu06g02139 767 SUPERFAMILY Protein kinase-like (PK-like) 483 727 IPR011009 -
Tsu06g02139 767 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 646 755 - -
Tsu06g02139 767 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 15 616 - -
Tsu06g02139 767 PIRSF SRK 1 620 IPR024171 GO:0004674
Tsu06g02139 767 PIRSF SRK 646 767 IPR024171 GO:0004674
Tsu06g02139 767 Pfam D-mannose binding lectin 70 177 IPR001480 -
Tsu06g02139 767 Gene3D Transferase(Phosphotransferase) domain 1 641 732 - -
Tsu06g02139 767 Pfam PAN-like domain 340 403 IPR003609 -
Tsu06g02139 767 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 646 755 - -
Tsu06g02139 767 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 15 616 - -
Tsu06g02139 767 Pfam S-locus glycoprotein domain 210 318 IPR000858 GO:0048544
Tsu06g02139 767 SUPERFAMILY alpha-D-mannose-specific plant lectins 71 181 IPR036426 -
Tsu06g02139 767 SMART ntp_6 338 417 IPR003609 -
Tsu06g02139 767 CDD PAN_AP_plant 335 418 - -
Tsu06g02139 767 ProSiteProfiles PAN/Apple domain profile. 331 418 IPR003609 -
Tsu06g02139 767 ProSiteProfiles Protein kinase domain profile. 498 767 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu06g02139 767 Pfam Protein tyrosine and serine/threonine kinase 501 614 IPR001245 GO:0004672|GO:0006468
Tsu06g02139 767 ProSiteProfiles Bulb-type lectin domain profile. 20 145 IPR001480 -
Tsu06g02139 767 Gene3D - 15 148 IPR036426 -
Tsu06g02139 767 Gene3D Phosphorylase Kinase; domain 1 472 573 - -
Tsu06g02139 767 CDD B_lectin 27 151 IPR001480 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02139 Tsu-Chr6 26833702 26837657 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02139 473 739 Receptor kinase-like Gene Family AT4G23230 42.679 1.95e-70 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu06g02139 PK_Tyr_Ser-Thr 2.5e-20 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02139 - - mtr:MTR_6g012810 1040.02