Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02138 ATGGCACCTTTTGTATTGACAGTGTCACAAGATGGAACAGGGAACTATAGAACAGTACAAGAAGCCATTGATGCTGTGCCACTTGGCAATACTCGCCGAATGGTGATAAGGATATCGCCGGGAATCTACCGGCAACCACTATATGTTGCAAAGACTAAGAACTTCATCACTTTCGTTGGTTTGTGTCCTGAGGATACTGTGCTGACATGGAACAATACTGCCAATAAAATTGATCACCACCAAGGTTCTAAGGTTATAGGGAATGGAACTTTTGGTTGTGGAAGTACCATTGTGGAAGGGGAAGACTTTATTGCTGAGAATATTACTTTTGAGAATTCTTCTCCTGAGGGTTCAGGGCAAGCAGTGGCAGTTAGAGTAACAGCAGATCGATGTGCATTCTATAATTGCAGGTTCCTTGGATGGCAGGACACACTGTATTTACATTATGGCAAACaatatttgaaagattgttatATTGAAGGAAGTGTagacttcatttttggtaataGCACTGCACTCTTCGAGCATTGCCATATCCACTGCAAGTCTGCAGGGTTCATAACTGCACAGAGCAGAAAATCTCCGCACGAAAAAACTGGTTATGTATTCCTACGATGTGTTATAACAGGCAATGGAGGAAGTGCATATGCATATCTTGGAAGGCCATGGGGACCTTTAGGAAGAGTAGTCTTTGCATTTACTCATATGGATCCTTGTATAAAGCCCGTCGGATGGAATAATTGGGGAAAAGTTGAGAATGAAAAAAGTGCTTGCTTCTACGAATATAGGTGTTTTGGACCGGGTTTTGTTCCATCGAAACGGGTGAAATGGGCTAGAGTGTTGAAGGATAAAGAAGCTGAGCAATTTCTCATGCATAGCTTCATTGATCCAGAACCACAAAGACCTTGGCTTGCTCAAAGAATGGCCTTAAGGATTCCATATTCTGCATAG 951 0.4111 MAPFVLTVSQDGTGNYRTVQEAIDAVPLGNTRRMVIRISPGIYRQPLYVAKTKNFITFVGLCPEDTVLTWNNTANKIDHHQGSKVIGNGTFGCGSTIVEGEDFIAENITFENSSPEGSGQAVAVRVTADRCAFYNCRFLGWQDTLYLHYGKQYLKDCYIEGSVDFIFGNSTALFEHCHIHCKSAGFITAQSRKSPHEKTGYVFLRCVITGNGGSAYAYLGRPWGPLGRVVFAFTHMDPCIKPVGWNNWGKVENEKSACFYEYRCFGPGFVPSKRVKWARVLKDKEAEQFLMHSFIDPEPQRPWLAQRMALRIPYSA 316
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02138 316 PANTHER PECTINESTERASE 1 315 - -
Tsu06g02138 316 SUPERFAMILY Pectin lyase-like 3 303 IPR011050 -
Tsu06g02138 316 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 315 - -
Tsu06g02138 316 Pfam Pectinesterase 7 296 IPR000070 GO:0030599|GO:0042545
Tsu06g02138 316 Gene3D - 4 309 IPR012334 -
Tsu06g02138 316 ProSitePatterns Pectinesterase signature 2. 159 168 IPR033131 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02138 Tsu-Chr6 26830549 26833084 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02138 5 309 Carbohydrate Esterase AT5G47500 38.019 3.70e-70 220
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02138 K01051 - gmx:100810259 578.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02138 06 26830549 26833084 Tsu06g02138 06 26830549 26833084 ECH