Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02127 ATGGGAAGATCACCATGTTGTGACAAAGTTGGTTTAAAGAAAGGTCCATGGACTCCGGAAGAAGATCAAAAACTCTTAGCTTATATTGATGAACATGGTCATGGAAGTTGGCGCGCTTTACCGGCTAAAGCCGGACTTCAAAGATGTGGTAAGAGCTGTAGATTAAGATGGACTAATTATCTTAGGCCAGATATTAAGAGAGGAAAGTTTAGTTTGCAAGAAGAACAAACAATTATTCAACTCCATGCTCTCTTAGGGAACAGGTGGTCGGCTATAGCAACACATTTGTCAAAGAGAACAGATAATGAGATAAAGAATTATTGGAACACACATCTTAAGAAAAGATTAACAAAAATGGGAATTGATCCTATTACACACAAGCCTAAAAATGATGCTCTTCTTTCATCAAGTGATAATGCTAATTCAAAAACAGCTTCAAATCTTAGTCACATGGCTCAATGGGAAAGTGCTCGTCTTGAAGCTGAAGCTAGACTTGTTAGAGAATCCAAAATTCGTTcacataatcataatcataatcactTTGGTGGAAATTCTCATTTGAAGGCTTGGAATATTAATCTTGAATCTCCTACTTCAACTTTATCTTACAATGAAAATGTGACACCAATTATTACTAGTGGAGAAATGGGAGGTGCAAATAGCAatatcaacaaagaaaaaaacaacaatgaggatgaaaatattaataatgATGAAAACAATGTTGTTGTGTCTATGATTGAGTTTGTAGGGACAAATTCAAGTTCAATTGTTAAAGAAGAAGGTGGTGATGATCAAGAACAATGGAAAGGTTATGAAAGTTCATTGACTTTTACATCAAATCTTCATCATGAGTTGACTATGTCAATGGATCAAGGTGTTAGTGATGTTATTGCTGAAGAAGGGTTTACTAATCTTTTACTTAAAACAAATTCTGAAGATTTAAGTTTGTCAGAAAGTGGAGGTGAATCTAAcaatggtggtggtgatggtggaAGTGGAAGTGAATTCTATGAAGATAACAATAACTATTGGAATAGTATTCTTAATTTAGTTAATTCTTCTCCTTCTGATTCACCAATGTTTTGA 1089 0.3177 MGRSPCCDKVGLKKGPWTPEEDQKLLAYIDEHGHGSWRALPAKAGLQRCGKSCRLRWTNYLRPDIKRGKFSLQEEQTIIQLHALLGNRWSAIATHLSKRTDNEIKNYWNTHLKKRLTKMGIDPITHKPKNDALLSSSDNANSKTASNLSHMAQWESARLEAEARLVRESKIRSHNHNHNHFGGNSHLKAWNINLESPTSTLSYNENVTPIITSGEMGGANSNINKEKNNNEDENINNDENNVVVSMIEFVGTNSSSIVKEEGGDDQEQWKGYESSLTFTSNLHHELTMSMDQGVSDVIAEEGFTNLLLKTNSEDLSLSESGGESNNGGGDGGSGSEFYEDNNNYWNSILNLVNSSPSDSPMF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02127 362 MobiDBLite consensus disorder prediction 122 144 - -
Tsu06g02127 362 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu06g02127 362 SMART sant 66 114 IPR001005 -
Tsu06g02127 362 SMART sant 13 63 IPR001005 -
Tsu06g02127 362 CDD SANT 69 112 IPR001005 -
Tsu06g02127 362 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu06g02127 362 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu06g02127 362 CDD SANT 16 61 IPR001005 -
Tsu06g02127 362 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 358 - -
Tsu06g02127 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Tsu06g02127 362 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu06g02127 362 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu06g02127 362 Gene3D - 69 116 - -
Tsu06g02127 362 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu06g02127 362 MobiDBLite consensus disorder prediction 314 337 - -
Tsu06g02127 362 PANTHER MYB TRANSCRIPTION FACTOR MIXTA-LIKE PROTEIN 1 358 - -
Tsu06g02127 362 MobiDBLite consensus disorder prediction 130 144 - -
Tsu06g02127 362 Gene3D - 11 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02127 Tsu-Chr6 26739382 26741690 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02127 1 207 MYB Transcription Factor Family AT3G01140 70.925 4.06e-110 323
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g02127 Myb_DNA-binding 3.9e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02127 K09422 - gmx:100101835 447.588
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02127 06 26739382 26741690 Tsu06g02127 06 26739382 26741690 ECH