Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02126 ATGATGGATGCAATGGAGAAAAATTCAAGAGATGTAGAGAgtgataaaaaatttgaattaccACCTGGATTTAGGTTTCATCCAACAGATGAAGAACTCATAACTCATTACCTCTCTCAAAAAACTCTTGATAATTGCTTTTGTGCTATAGCCATTGGAGAAGCTGATTTGAACAAGTGTGAACCTTGGGATTTGCCTAGGAGGGCCAAAATGGGTGAGAAGGAGTGGTATTTTTTCTGTGTGAGGGACAGAAAATATCCAACTGGTCTAAGGACAAATAGGGCCACATGTGCTGGATATTGGAAGGCAACGGGTAaagacaaagaaatatataGAGAGAAGACTCTAATTGGAATGAAGAAGACACTTGTTTTCTACAAAGGAAGAGCTCCTAAAGGTGAAAAAACAAATTGGGTCATGCATGAATACAGATTAGAAGACACACATTCCTTGCATAACATATCCAAAAGAGCTATGAAGGAGTGGTCTATATGCAGAGTGTTTGAGAAAGGTTCTTGTGGAAAGAAAATGCATATTCAAGATTTGGTAAGTTTCAAATCAATGGGAAAAGAACAACTACCTCCATTGATGGATTCACCACCATACAATagtgaaacaaaaaatactatTGGAGATTCATCACACATAACCCTATGTTTCAATGATACAAATCTAATTGATTATAATCAAACGACACAAGATAATGATAAAAACATAGTTAATAGCTTTGAAACACCTATGTTAGCATCTTCATATTCTTCAAACCCTTCTTATGATAATATTTCACCTGCCTCATGGACCCCTACTTTGTCACACCAATCAAAACAAATTGGAAATTCAAATTCTTCAGATTGTTGTATGGTTCAAGAACAATCCAAGTTGAAGATgttaattgatgaaaataatggAACAAATACAAAGACAAAAAATCAGAAAGTTCAAGAATGTGACTTTGATGTTGACAATTCATCTATGATGTACAACAATGAAATGTTTCAAAGATCATATGTGTGTGAAGAAGAATATTCATCAGCTTCAATTGGACATTTTGAAAGTGGTTATCTATGGAATTTTTGA 1077 0.3268 MMDAMEKNSRDVESDKKFELPPGFRFHPTDEELITHYLSQKTLDNCFCAIAIGEADLNKCEPWDLPRRAKMGEKEWYFFCVRDRKYPTGLRTNRATCAGYWKATGKDKEIYREKTLIGMKKTLVFYKGRAPKGEKTNWVMHEYRLEDTHSLHNISKRAMKEWSICRVFEKGSCGKKMHIQDLVSFKSMGKEQLPPLMDSPPYNSETKNTIGDSSHITLCFNDTNLIDYNQTTQDNDKNIVNSFETPMLASSYSSNPSYDNISPASWTPTLSHQSKQIGNSNSSDCCMVQEQSKLKMLIDENNGTNTKTKNQKVQECDFDVDNSSMMYNNEMFQRSYVCEEEYSSASIGHFESGYLWNF 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02126 358 Gene3D NAC domain 29 173 IPR036093 GO:0003677|GO:0006355
Tsu06g02126 358 ProSiteProfiles NAC domain profile. 20 170 IPR003441 GO:0003677|GO:0006355
Tsu06g02126 358 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 12 336 - -
Tsu06g02126 358 SUPERFAMILY NAC domain 17 170 IPR036093 GO:0003677|GO:0006355
Tsu06g02126 358 Pfam No apical meristem (NAM) protein 21 145 IPR003441 GO:0003677|GO:0006355
Tsu06g02126 358 PANTHER NAC DOMAIN-CONTAINING PROTEIN 100 12 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02126 Tsu-Chr6 26716618 26718495 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02126 19 358 NAC Transcription Factor Family AT5G07680 51.320 2.47e-109 320
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu06g02126 NAM 8.4e-40 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02126 - - gmx:100785620 450.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02126 06 26716618 26718495 Tsu06g02126 06 26716618 26718495 ECH
Tsu04g00172 04 1627962 1630075 Tsu06g02126 06 26716618 26718495 ECH