Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02125 ATGGCTTGCAAGGTAAAGGACTCTTCGGACGCTCTCTATGGAGACATTGCTGATATATCTCCTGGAAAGGAAATTCTTCGTATCAAGGTCAAGGTTCTTCGCATGTGGAAGGTTCCTGCTTTCCTCAATCCGAGTGAGTTTAGTTCTATTGAAATGGTTCTTGTTGATGAAAAGCTAACAAAGATGGTTGTTATAGAGCTAACTGATCATAGCGGTAAATGTGAATGTGCTCTGTTTGGTGACTATGTTGATGAGTTGAATAAGAAAATGGGGAAATCTTCTGACGGTTTACCTATTGTTGTCATTCAATTTGCAAAGGTTAAAATTTTTAGAGATAAAGCAGCTCTCCAGAATGTGATGAATACCACGAGGATTTTGGTTAATCCAGATATCCCTGAAGTTGATAATTTTAAGAATagTATTGCTGTCCATGGTATAGAGATTGGTGGTCCTGTTCCTATGATTGGTGATCGTCCTAAGCCATCTATGGAGGAAGAGTTTCTTCGCATGCATCCCAAGAAAAGTGTATCTGAGCTTTCTGGTTTGTGTGAAGATGGGGTTTTTGTTGTCTGTGTTGAGGTTGTTGGCATCGTTGATGGACATGATTGGTGGTATCCTGCGTGCAAGTGTCATAAGGCTGTTATTGCTGACTCTGGTTCATATTTCTGTAGTGGGTGTAATAGGCATGTGTTTCAGGTTGTGCCCAGGTTTAGGGTTAAGATTGAGGCTACTGATGGTAAGGATTCTggtgtttttgttatttttgattCTGATATGAGCTACATCATGGAGAAGTCATGTTCTTATTTTGTTGCTCGGAACAAGGCTAATGGTGCTGGTCTATATCCAAATGAGTTTGACAGTCTTGTTGGTAAGAAAATGTTGTTGGCTGTTAATAAGCCATTGAAGGAATGTCAGATCTCTGATGGTTCTCATAGGGTTAAGAGAATTTGCCTAGACCCTACCATAATTGAGAGGTTTTGTGCTGAAGGTCCTTACTTTACTCCATCTAAGAGAAATCTTGCTACAATCGATCTTGATTCTGATGGATTATCTGATGAGGCTaacattgatgatgatgattcacaACCCCTTGAGTTTTTAAAGGATTTGATTGTCACACCCCCAAGTGCTTCAAACAAGACTCCAGAGAAAGATGTTGTTGGTGGTCGACTTAAGAGAAATTTGTCCAAAGCTTTTGATGTTGTTGCCAAGCCACCTGGTCCTAGGCGCCTTAGGAAGGTGAAGATTGAGGAGGATTGA 1263 0.3935 MACKVKDSSDALYGDIADISPGKEILRIKVKVLRMWKVPAFLNPSEFSSIEMVLVDEKLTKMVVIELTDHSGKCECALFGDYVDELNKKMGKSSDGLPIVVIQFAKVKIFRDKAALQNVMNTTRILVNPDIPEVDNFKNSIAVHGIEIGGPVPMIGDRPKPSMEEEFLRMHPKKSVSELSGLCEDGVFVVCVEVVGIVDGHDWWYPACKCHKAVIADSGSYFCSGCNRHVFQVVPRFRVKIEATDGKDSGVFVIFDSDMSYIMEKSCSYFVARNKANGAGLYPNEFDSLVGKKMLLAVNKPLKECQISDGSHRVKRICLDPTIIERFCAEGPYFTPSKRNLATIDLDSDGLSDEANIDDDDSQPLEFLKDLIVTPPSASNKTPEKDVVGGRLKRNLSKAFDVVAKPPGPRRLRKVKIEED 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02125 420 Gene3D - 164 318 IPR012340 -
Tsu06g02125 420 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 57 271 - -
Tsu06g02125 420 CDD RPA1_DBD_C 203 293 IPR013955 -
Tsu06g02125 420 SUPERFAMILY Nucleic acid-binding proteins 56 147 IPR012340 -
Tsu06g02125 420 Pfam Replication factor-A C terminal domain 194 275 IPR013955 -
Tsu06g02125 420 PANTHER REPLICATION FACTOR A 1, RFA1 57 271 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu06g02125 420 Coils Coil 413 420 - -
Tsu06g02125 420 CDD RPA1_DBD_B_like 45 138 - -
Tsu06g02125 420 Gene3D - 45 147 IPR012340 -
Tsu06g02125 420 SUPERFAMILY Nucleic acid-binding proteins 185 299 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02125 Tsu-Chr6 26709431 26712202 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02125 60 263 Core DNA Replication Machinery Family AT2G06510 20.091 2.42e-06 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02125 - - mtr:MTR_8g062030 320.087