Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02121 ATGTCTCATCTATGCTTTCTTATCCTTGGAATTATTTTCTCCATGATCTCATATGTTTATGGTTATGGAAACAATTGGGGTTGGATTAATGCACATGCAACCTTCTATGGTGGCAGTGATGCTTCTGGCACAATggGTGGGGCATGTGGATATGGAAACTTGTATAGTCAAGGTTATGGGACTAATACAGCAGCACTTAGCACTGCATTATTCAACAATGGTTTGAGTTGTGGTTCATGCTATGAAATTAAATGTGCAAATGATCCAAAATGGTGTCTACCTGGCTCCATTGTTGTTACTGCCACTAATTTCTGTCCACCTGGTGGTTGGTGTGACCCTCCCAATCACCATTTTGATCTCTCTCAACCTGTTTTCCAACACATTGCTCAATATAAAGCTGGTATTGTTCCTGTTGTTTATAGAAGGGTAAGATGTAGAAGAAGAGGTGGAATAAGGTTCACAATCAATGGTCATTCATATTTCAACTTAGTCCTTGTGACCAATGTTGGAGGTGCTGGTGATGTGCATTCAGTAGCCATCAAAGGTTCAAGGACAAGATGGCAAGCCATGTCAAGAAATTGGGGACAAAATTGGCAGAGCAACTCTTACTTAAATGGACAAAGTCTTTCATTTGTAGTCACCACTGGTAATGGTCATAGTATTGTGTCATTTAATGTTGCCCCACCTAGTTGGTCCTTTGGACAAACCTACACTGGAAGACAGTTCCTCTACTAA 735 0.4041 MSHLCFLILGIIFSMISYVYGYGNNWGWINAHATFYGGSDASGTMGGACGYGNLYSQGYGTNTAALSTALFNNGLSCGSCYEIKCANDPKWCLPGSIVVTATNFCPPGGWCDPPNHHFDLSQPVFQHIAQYKAGIVPVVYRRVRCRRRGGIRFTINGHSYFNLVLVTNVGGAGDVHSVAIKGSRTRWQAMSRNWGQNWQSNSYLNGQSLSFVVTTGNGHSIVSFNVAPPSWSFGQTYTGRQFLY 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02121 244 PANTHER EXPANSIN-A15 9 242 IPR002963 GO:0009664
Tsu06g02121 244 Gene3D - 150 242 IPR036749 -
Tsu06g02121 244 Gene3D - 19 146 IPR036908 -
Tsu06g02121 244 PANTHER EXPANSIN 9 242 - -
Tsu06g02121 244 SMART dpbb_1 63 140 IPR007112 -
Tsu06g02121 244 SUPERFAMILY Barwin-like endoglucanases 27 168 IPR036908 -
Tsu06g02121 244 Pfam Lytic transglycolase 63 140 IPR009009 -
Tsu06g02121 244 PRINTS Expansin/Lol pI family signature 27 42 IPR007118 GO:0005576
Tsu06g02121 244 PRINTS Expansin/Lol pI family signature 45 63 IPR007118 GO:0005576
Tsu06g02121 244 PRINTS Expansin/Lol pI family signature 67 85 IPR007118 GO:0005576
Tsu06g02121 244 PRINTS Expansin/Lol pI family signature 133 149 IPR007118 GO:0005576
Tsu06g02121 244 PRINTS Expansin/Lol pI family signature 187 201 IPR007118 GO:0005576
Tsu06g02121 244 PRINTS Expansin/Lol pI family signature 225 239 IPR007118 GO:0005576
Tsu06g02121 244 Pfam Expansin C-terminal domain 151 228 IPR007117 -
Tsu06g02121 244 PRINTS Expansin signature 58 72 IPR002963 GO:0009664
Tsu06g02121 244 PRINTS Expansin signature 85 96 IPR002963 GO:0009664
Tsu06g02121 244 PRINTS Expansin signature 97 107 IPR002963 GO:0009664
Tsu06g02121 244 PRINTS Expansin signature 108 125 IPR002963 GO:0009664
Tsu06g02121 244 PRINTS Expansin signature 125 138 IPR002963 GO:0009664
Tsu06g02121 244 PRINTS Expansin signature 149 161 IPR002963 GO:0009664
Tsu06g02121 244 PRINTS Expansin signature 161 182 IPR002963 GO:0009664
Tsu06g02121 244 PRINTS Expansin signature 196 217 IPR002963 GO:0009664
Tsu06g02121 244 PRINTS Expansin signature 225 241 IPR002963 GO:0009664
Tsu06g02121 244 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 160 239 IPR007117 -
Tsu06g02121 244 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 46 150 IPR007112 -
Tsu06g02121 244 SUPERFAMILY PHL pollen allergen 147 239 IPR036749 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02121 Tsu-Chr6 26605037 26607716 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02121 8 242 Expansin Gene Family AT2G03090 77.328 1.62e-138 387
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02121 - K20628 gmx:100799370 441.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02121 06 26605037 26607716 Tsu03g01624 03 16194934 16197323 ECH
Tsu06g02121 06 26605037 26607716 Tsu06g02121 06 26605037 26607716 ECH
Tsu04g00165 04 1581847 1584267 Tsu06g02121 06 26605037 26607716 ECH
Tsu05g01898 05 20867566 20870093 Tsu06g02121 06 26605037 26607716 ECH