Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02119 atgttGGAAGCCAAAGACCCTGCGATCAAGCTTTTTGGGAAGACGATTCCGGTACCGGAGATCTCTTCTGGATCCGGTGACTCTACCGGAGCTCCGGCTTCATCTTCTGGTGATGCTGTTGATGATGGTATCATTCAAAACCATGCTTCTTCCTTAAACTCTTCAAATACAAACATggatgaagaagagaaagaaattgatgagGACACAATGGAAGAGGAACTGACCAACTGTAAGAAGGAAAAAGATGAAACTCGCGCCCAATCGTCACAAAAGAACACTGATCAGGACACTGCCTCAAGATTAGTGGAAGAATCTTTTAACCCTTCCACCGAGGAGGAGCAAAAGACTAATGAAGAACAGGCTGAGAATGCACAAGATAAGACCTTGAAAAAGCCAGACAAAATACTTCCTTGCCCCCGATGTAATAGCATGGACACCAAGTTCTGTTACTACAATAATTACAATGTTAACCAGCCGCGTCATTTCTGCAAAAACTGCCAGAGATACTGGACTGCCGGTGGGGCCATGAGAAACGTGCCTGTAGGCGCCGGTCGCAGGAAGAACAAGAATTCTGGTTCTCACTATCGCCAGATAACTGTCCCTGATGCAGCAGCCGTTCAGAATTCTCAATCTGATTTGCCTAATGGAATCCATCCTCCTCCTCTGAACTGTAATGGCACGGTCTTTACGTTCGGGACAGATTCACCCTTGTGTGAATCTATGGAATCTGCATTGAACATTGTTGATAAAGGAGTTAATAATGGCACGAAAAATGGATTCATTAGACCGGAAGATCTAAGAGTTCATGTTCCCTATGCTGGTGAAGAAAATAGCAATGAATCTCCTGACGCATCGGCAACGCCAGCGGAAGATGCAACTGTCCACAATTCTGTAGAACAAGTTATGCCGAATTGTCAAAGCTTCCCACCTCAAGTTCCATATTACCCAGGTGCCCCTTGGCTTTTGCCGTGGAATCCATCCCAATGGAGCTCTCAAGTACAACCACCACCTGCTTTTTTCCCACAAGGATTCGCCATGCCACTCTATCCTCCACCTGCTTATTGGGGTTTTACTGTTCCTGGAGCGTTTAATAATCCATGGCTGGCACAACCATCATCGCCAAGTAGTGCAGCCGTTAACTCCGGTCCTAACTCGCCAACCTTAGGTAAGCATTCAAGGGAAGAAAGCACACTCAAATTGAACGAAGCAGCAGGTTCTGACGAAGGAAACAATAAAGAAGAAAAGTCACTTTGGGTTCCCAAAACATTGAGGATTGATGACTTAGGAGAAGCAGAAAAAAGCTCTATATTGACAACTCTTGGGATTAAAAACAATAAGGTAGACATGATTCGCGGGGGAGGACTTTTCAAAGCATTTGCGTCAAAGGACGATGAAAAAGATGGCATGCAAAACTCACCTGTCATGCAGGCCAATCCTGCAGCAATGTCTAGGTCAATTAACTTCCGTGAGACCTCATAA 1482 0.4433 MLEAKDPAIKLFGKTIPVPEISSGSGDSTGAPASSSGDAVDDGIIQNHASSLNSSNTNMDEEEKEIDEDTMEEELTNCKKEKDETRAQSSQKNTDQDTASRLVEESFNPSTEEEQKTNEEQAENAQDKTLKKPDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGAMRNVPVGAGRRKNKNSGSHYRQITVPDAAAVQNSQSDLPNGIHPPPLNCNGTVFTFGTDSPLCESMESALNIVDKGVNNGTKNGFIRPEDLRVHVPYAGEENSNESPDASATPAEDATVHNSVEQVMPNCQSFPPQVPYYPGAPWLLPWNPSQWSSQVQPPPAFFPQGFAMPLYPPPAYWGFTVPGAFNNPWLAQPSSPSSAAVNSGPNSPTLGKHSREESTLKLNEAAGSDEGNNKEEKSLWVPKTLRIDDLGEAEKSSILTTLGIKNNKVDMIRGGGLFKAFASKDDEKDGMQNSPVMQANPAAMSRSINFRETS 493
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02119 493 MobiDBLite consensus disorder prediction 21 35 - -
Tsu06g02119 493 Pfam Dof domain, zinc finger 134 191 IPR003851 GO:0003677|GO:0006355
Tsu06g02119 493 MobiDBLite consensus disorder prediction 1 133 - -
Tsu06g02119 493 PANTHER DOF-TYPE ZINC FINGER DNA-BINDING FAMILY PROTEIN 1 492 - -
Tsu06g02119 493 PANTHER CYCLIC DOF FACTOR 2 1 492 IPR045174 GO:0003700|GO:0006355
Tsu06g02119 493 MobiDBLite consensus disorder prediction 73 90 - -
Tsu06g02119 493 MobiDBLite consensus disorder prediction 107 133 - -
Tsu06g02119 493 Coils Coil 45 88 - -
Tsu06g02119 493 MobiDBLite consensus disorder prediction 463 493 - -
Tsu06g02119 493 ProSiteProfiles Zinc finger Dof-type profile. 137 191 IPR003851 GO:0003677|GO:0006355
Tsu06g02119 493 MobiDBLite consensus disorder prediction 472 493 - -
Tsu06g02119 493 MobiDBLite consensus disorder prediction 371 396 - -
Tsu06g02119 493 MobiDBLite consensus disorder prediction 371 392 - -
Tsu06g02119 493 ProSitePatterns Zinc finger Dof-type signature. 139 175 IPR003851 GO:0003677|GO:0006355
Tsu06g02119 493 MobiDBLite consensus disorder prediction 91 106 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02119 Tsu-Chr6 26591846 26595048 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02119 6 493 C2C2-Dof Transcription Factor Family AT5G39660 43.520 1.36e-105 321
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu06g02119 zf-Dof 3.7e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02119 - - aprc:113862693 617.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02119 06 26591846 26595048 Tsu03g01621 03 16173113 16176180 ECH
Tsu06g02119 06 26591846 26595048 Tsu06g02119 06 26591846 26595048 ECH
Tsu04g00160 04 1557722 1560566 Tsu06g02119 06 26591846 26595048 ECH
Tsu05g01889 05 20776737 20778858 Tsu06g02119 06 26591846 26595048 ECH