Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02110 ATGATGGAGGTTTTAACAACAACGACAACAACcaccacaaacacaaacacaatcaCTACTACTCCATTAACAAATTCAAAACCACAAGAACCCGAATCAGAAAACCCGACCCGAATTCAACAACCCATAACCTTAAACATAACAAAGCCtttgtctttttcaaatggGGTTCTTAAACGCCACCACCCAAACACTCATAACCACCATAACAACCAccacaacaacaataacaacaacgtTGTTGTTACTTACAAAGAATGTCTCAAAAACCACGTGGCAACTTTAGGTGGTCATGCACTTGACGGTTGTTGTGAATTCATGCCGTCACCAACCGCCACCTCCGACGACCCTGCTTCCATAAAATGTGCCGCTTGTGGTTGTCACCGGAATTTCCACCGCCGTGAACCGGAAGAACCAATTTCCACCGTTTTTGAATATCAACCACATCACCGCCACCACCCACCTCCGCCGCCGCTTTTTCAATCCCGTTCACCAAGCTCCCCTTCACCACCGCCGATCTCATCATACCCATCAGCTCCTCATATGCTTTTAGCACTCTCCGGCGCCGGAGTTGGACTCTCAATCCCACCGGAAAACACAGCAGTACCTTTAAACCTTAGTTCTCCGATGGGTACTAGTAGAAAAAGATTCAGAACAAAATTCACACAAGAACAAAAGGATAAGATGCATGAATTTGCTGATAAAGTTGGGTGGAAGATGCAGAAAAGAGATGAAGAAATGGTGAATGGATTTTGTAATGAAGTTGGTGTTGATAGAAGTGTTCTTAAAGTTTGGATGCATAATAATAAGAACACTTTGGGAAGAAAATTATCAGATCATGTTAATGGTAACGGCGCCGCCGTGGGAACCGCCGTTGACGGTGGTTCCGGTGGTGGTTTTGGTGTTCATGAGAATGATAATAATGGGACTAATGTTGCTGCTTGTGGTACTACTAATgggtcttcttcttcttcttga 978 0.407 MMEVLTTTTTTTTNTNTITTTPLTNSKPQEPESENPTRIQQPITLNITKPLSFSNGVLKRHHPNTHNHHNNHHNNNNNNVVVTYKECLKNHVATLGGHALDGCCEFMPSPTATSDDPASIKCAACGCHRNFHRREPEEPISTVFEYQPHHRHHPPPPPLFQSRSPSSPSPPPISSYPSAPHMLLALSGAGVGLSIPPENTAVPLNLSSPMGTSRKRFRTKFTQEQKDKMHEFADKVGWKMQKRDEEMVNGFCNEVGVDRSVLKVWMHNNKNTLGRKLSDHVNGNGAAVGTAVDGGSGGGFGVHENDNNGTNVAACGTTNGSSSSS 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02110 325 MobiDBLite consensus disorder prediction 1 40 - -
Tsu06g02110 325 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 84 135 IPR006456 -
Tsu06g02110 325 SUPERFAMILY Homeodomain-like 207 275 IPR009057 -
Tsu06g02110 325 PANTHER HOMEOBOX DOMAIN, ZF-HD CLASS PROTEIN 8 282 - -
Tsu06g02110 325 MobiDBLite consensus disorder prediction 147 176 - -
Tsu06g02110 325 Gene3D - 205 274 - -
Tsu06g02110 325 MobiDBLite consensus disorder prediction 153 176 - -
Tsu06g02110 325 Pfam ZF-HD protein dimerisation region 82 136 IPR006456 -
Tsu06g02110 325 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 83 135 IPR006456 -
Tsu06g02110 325 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 214 271 IPR006455 -
Tsu06g02110 325 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 282 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02110 Tsu-Chr6 26501907 26503319 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02110 2 270 ZF-HD Transcription Factor Family AT5G15210 49.819 5.49e-74 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu06g02110 ZF-HD_dimer 3.3e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02110 - - gmx:100814730 296.589
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02110 06 26501907 26503319 Tsu06g02110 06 26501907 26503319 ECH
Tsu06g02110 06 26501907 26503319 Tsu04g00149 04 1431862 1433472 PCT