Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02104 ATGAGGAAGAGACAAGTAGTTGTGAGAAGAACAGAAGATACACAAAGAAGTGTTGTGAAATATGGAGAGTGTCAAAAGAATCATGCAGCTAATGTTGGAGGTTATGCTGTTGATGGTTGTAGAGAGTTTATGGCAAGTAGTGAAGAAGGTACAAATGGTGCTCTTACTTGTGCTGCTTGTGGTTGTCACAGAAACTTTCACAAAAGAGAGTTAGTTGAAACTGAAAGTGTTTCTGAGTGTTCAAATGGTACTTGA 255 0.3843 MRKRQVVVRRTEDTQRSVVKYGECQKNHAANVGGYAVDGCREFMASSEEGTNGALTCAACGCHRNFHKRELVETESVSECSNGT 84
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02104 84 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 21 70 IPR006456 -
Tsu06g02104 84 PANTHER MINI ZINC FINGER PROTEIN 3 8 81 - -
Tsu06g02104 84 Pfam ZF-HD protein dimerisation region 19 71 IPR006456 -
Tsu06g02104 84 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 8 81 - -
Tsu06g02104 84 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 20 70 IPR006456 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02104 Tsu-Chr6 26440359 26441237 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02104 1 82 Zinc finger-homeobox gene family AT3G28917 63.158 9.43e-33 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Tsu06g02104 ZF-HD_dimer 4.9e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02104 - - aprc:113868039 137.887