Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02103 atggtgagaCCACCTTGTTGTGATAAAGAAGGTGTGAAGAAAGGTCCTTGGACTCCTGAAGAAGATATCATTTTGGTTTCATATATTCAAGAACATGGTCCTGGAAATTGGAAAGCTGTTCCTACCAATACTGGTTTGTTAAGGTGTAGTAAGAGTTGCAGACTTAGATGGACTAATTATCTAAGGCCAGGAATTAAAAGGGGTAACTTCACTGATCAAGAGGAGAAAATGATTATCCATCTCCAAGCTCTTTTAGGAAATagATGGGCTGCAATAGCTGCATACCTTCCACAAAGAACAgataatgatataaaaaattattggaacacttatttgaagaaaaagctgaaaaaattggaaacaagTACTTCTTTTGAATCATGTTTAGGACATGATGATTTCTCAGTTTCTCAACCAATAGCTAGAGGACAATGGGAAAGAAGACTTCAAACCAACATTGACATGGCTAAAAAAGCACTTAGTGATGCACTTTCACCACAAAAAAGCACTTCTAGCAACAACTTATTATTACCACTTGAATCTAACATTTCTAGTGAAAGCTCTTTTTgttcaacaaaacaaacatcacaaacacaaacacaatctTTGTGTTATGCTTCAAGTGCTGACAACATAGCTCGTTTGTTGAAAGGTTGGATGAAAAATAAGCCAAAAGGGTTAAATGGTAATTACTCAAATGTGACacaaaattcatttaatattgatttggCTTGTGGAGGAAATTATGAGACTAGTGTTTCTAGTGAAGGAATGGAAAAAGGGTCATCAACAAATGTTGAAATTTCAGAGACTTTTGAGTCTATGTTTGGTTATGAATCTTTGGAATCTACAAATTCTGATTCTAATAATCTTTTTCAAGATGAGAGTAAACCTGAAATTATTGGTGATGGTGAAATTATGCCTTTCTCTTTGCTTGAAAAATGGCTTCTAGATGATGGTGGTATTCAAGAGAAAGTTGGTCTTAGTGaaattaattatgtattttga 1008 0.3026 MVRPPCCDKEGVKKGPWTPEEDIILVSYIQEHGPGNWKAVPTNTGLLRCSKSCRLRWTNYLRPGIKRGNFTDQEEKMIIHLQALLGNRWAAIAAYLPQRTDNDIKNYWNTYLKKKLKKLETSTSFESCLGHDDFSVSQPIARGQWERRLQTNIDMAKKALSDALSPQKSTSSNNLLLPLESNISSESSFCSTKQTSQTQTQSLCYASSADNIARLLKGWMKNKPKGLNGNYSNVTQNSFNIDLACGGNYETSVSSEGMEKGSSTNVEISETFESMFGYESLESTNSDSNNLFQDESKPEIIGDGEIMPFSLLEKWLLDDGGIQEKVGLSEINYVF 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02103 335 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu06g02103 335 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Tsu06g02103 335 Gene3D - 69 128 - -
Tsu06g02103 335 CDD SANT 16 61 IPR001005 -
Tsu06g02103 335 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 329 - -
Tsu06g02103 335 Gene3D - 13 66 - -
Tsu06g02103 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Tsu06g02103 335 CDD SANT 69 111 IPR001005 -
Tsu06g02103 335 SMART sant 66 114 IPR001005 -
Tsu06g02103 335 SMART sant 13 63 IPR001005 -
Tsu06g02103 335 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu06g02103 335 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu06g02103 335 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu06g02103 335 PANTHER TRANSCRIPTION FACTOR MYB-HB-LIKE FAMILY-RELATED 1 329 - -
Tsu06g02103 335 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02103 Tsu-Chr6 26399794 26401750 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02103 1 329 MYB Transcription Factor Family AT5G62470 50.000 1.97e-99 295
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g02103 Myb_DNA-binding 4.4e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02103 K09422 - gmx:780542 397.512
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02103 06 26399794 26401750 Tsu04g00148 04 1405373 1407801 PCT