Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02095 atggaagaaagaaCTGAGATGGATAATAAGGTTGATGATTTGATGCCTGGTTTTCGTTTTCATCCCACAGATGAAGAGCTTGTTGGTTTTTATCTCAAGAGAAAAATTCAGCAAAAATCTCTTCCCATTGAACTTATTAAGCAAGTGGATATTTACAAATATGATCCATGGGATCTTCCAAAGCTGGCTAGTAGTGGTGAGAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATATAGAAATAGTTCAAGGCCCAATAGAGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGGCCTATATACTCATCAGATGGAAAATGCATTGGTTTGAAGAAATCACTTGTTTTCTATAAAGGTAGAGCTGCTAAAGGGACTAAAACTGATTGGATGATGCATGAGTTTAGGTTACCTTCTATTTCAGATTCAAATTCTCCTCCCAAAAAATTCTCAGATAAAAGCTTCTCTCCAAATGATTCATGGGCAATCTGTAGGATCTTCAAGAAAACCAATTCCCTTTCCATGGTACAAAAAGCTTTATCTCATCCTTGGATCTCTCAATTACCAGGAAGCATGGTATCTGAATTACTCACACAAACTACAAACATCAACCAATTCTGTTCAGAAAATAATATCTCATGCACAACAGAACAATTATCATCAGGGACAAACATACAAATCAACAAGAATGAGCTACAACAAGTTTCCAATAACAACAACTTCTCAACTTCAGATTTTCCAACATACAAACCAATCAACAACATTAACACAATTTCCAAATCCTCACAAATTCCCTGTTCCAATGGAGACATTGTTGATAACCTAATGTTCTACACACTTGAAGCCAATGGTTCCACAAAGTGCCCAATTGATGATAGTTCAATTCTTTCCAACACTAACTATATTGGTTTTGAAGATACaaataatcaatataatggaTTCTCAATTACTCTACCTCAAGATATGCAACCAAACATTGGCTTAGAAACTGAACAATTAGAAGAACAAGGTTGGAGGAAGAATATTCAAGATCAAATGCAGCTTAATCAATGGGAAAGTTTAGGAAGAACAATTGATTTTCCATTCAATTTGTCTCCAAATTTTGATGCTTTGAGGACTAGTGGTATATGGGATTCACCACCTTGCACAAGTGAAATGTCCACAACTTATGTCACTAGTAAATGTTACACTTAG 1203 0.3491 MEERTEMDNKVDDLMPGFRFHPTDEELVGFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISDSNSPPKKFSDKSFSPNDSWAICRIFKKTNSLSMVQKALSHPWISQLPGSMVSELLTQTTNINQFCSENNISCTTEQLSSGTNIQINKNELQQVSNNNNFSTSDFPTYKPINNINTISKSSQIPCSNGDIVDNLMFYTLEANGSTKCPIDDSSILSNTNYIGFEDTNNQYNGFSITLPQDMQPNIGLETEQLEEQGWRKNIQDQMQLNQWESLGRTIDFPFNLSPNFDALRTSGIWDSPPCTSEMSTTYVTSKCYT 400
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02095 400 Pfam No apical meristem (NAM) protein 16 140 IPR003441 GO:0003677|GO:0006355
Tsu06g02095 400 ProSiteProfiles NAC domain profile. 14 172 IPR003441 GO:0003677|GO:0006355
Tsu06g02095 400 Gene3D NAC domain 23 177 IPR036093 GO:0003677|GO:0006355
Tsu06g02095 400 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 1 398 - -
Tsu06g02095 400 SUPERFAMILY NAC domain 13 172 IPR036093 GO:0003677|GO:0006355
Tsu06g02095 400 PANTHER NAC DOMAIN-CONTAINING PROTEIN 94-RELATED 1 398 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02095 Tsu-Chr6 26322334 26325294 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02095 8 362 NAC Transcription Factor Family AT1G26870 49.326 1.47e-101 306
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Tsu06g02095 NAM 8.6e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02095 - - mtr:MTR_6g011860 716.072