Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02077 ATGTCTAGCAGAAGGTCAAGGCAacaatcttcttcttcaagaATTTCTGATGACCAAATCATTGAACTTGTTTCCAAGTTGCGTCAACTTGTTCCTGAGATTCGTCATAGACGTTCGGACAAGGTATCAGCATCTAAGGTCCTACAAGAGACTTGTAATTACATCAGAAGCTTACACAGAGAGGTTGATGATTTAAGTGAAAGATTGTCTCAGTTATTGGTCACAATTGATGCTGATAGTCCAGAAGCTAATATTATCAGAAGCTTAATTAATCAATAA 279 0.3477 MSSRRSRQQSSSSRISDDQIIELVSKLRQLVPEIRHRRSDKVSASKVLQETCNYIRSLHREVDDLSERLSQLLVTIDADSPEANIIRSLINQ 92
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02077 92 Coils Coil 55 75 - -
Tsu06g02077 92 CDD bHLH_AtPRE_like 15 73 - -
Tsu06g02077 92 Gene3D - 2 85 IPR036638 GO:0046983
Tsu06g02077 92 Pfam Helix-loop-helix DNA-binding domain 22 59 IPR011598 GO:0046983
Tsu06g02077 92 PANTHER TRANSCRIPTION REGULATOR 1 90 - -
Tsu06g02077 92 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 20 78 IPR036638 GO:0046983
Tsu06g02077 92 PANTHER TRANSCRIPTION FACTOR PRE 1 90 IPR044293 GO:0006355|GO:0040008|GO:0046983
Tsu06g02077 92 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 4 58 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02077 Tsu-Chr6 25981734 25986206 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02077 12 90 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G39860 73.750 4.21e-36 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu06g02077 HLH 3.7e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02077 - - gmx:100794486 142.895
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02077 06 25981734 25986206 Tsu06g02077 06 25981734 25986206 ECH
Tsu04g00141 04 1330691 1332310 Tsu06g02077 06 25981734 25986206 ECH
Tsu05g01799 05 19205226 19206505 Tsu06g02077 06 25981734 25986206 ECH
Tsu08g01904 08 24091059 24093441 Tsu06g02077 06 25981734 25986206 ECH
Tsu06g02077 06 25981734 25986206 Tsu04g00141 04 1330691 1332310 PCT