Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02057 ATGAGCAATGAGATTGGGCAGAAACCTCCACCTTCAATACTCGTTGGTCGATTCAAGGCTTTGTTGAAGCAACGTGAAGATGATCCTAGGTTAAGAAATTCGCAACCTTCAACTGAAGAAATTGTTCAGATTTACGAGTTGTTGTTATCTGAACTCACTTGTAATGTTAAACCTATCATCACTGATCTTACAATCATTGCTGAACAACATCGTGAACATGCTAAAGGAATCGCTTATGCTATTTGCGCTCGTATTCTTGAGGTGTCTGCAGATCAAAAGCTTCCTTCACTCTACCTCTTGGACAGTATTGTGAAGAATATTGGCCAGGAATATATTCGACACTTCTCAGTACGTCTTCCTGAAGTTTTCTGCGAGGCATACAGACAAGTTAATCCAAGTTTGCATTCTGCTATGCGACATCTCTTTGGTACCTGGTCAAAAGTCTTCCCTCCCTCTGTCTTGCGTAAGATTGATGGACAATTACAATTTTCTCAAGTAGTTAATAATCAATCATCAAGCGTTAATCCCCTCAGGGCTTCTGAATCACCTCGACCAACTCATGGGATACATGTTAACCCAAAATACATAAGACAAATGGAACACTCTACTTCAATTATGGATAGTGTTGTAGGCGAAAGATTAGACTCAACAGGAACTGTAGGAAATGCAAATTTAGGCCTTGTAGCTAGTAAGATTAATCAATTTGTCCCAAGTAAGGTTAGACGGTCCTCATCACCATCAAGAATTGGACTTGATAGGCATATGCCCTCATATATGGATGAATATGTAGCTGACAATCCTATTAGTAGGACAGTTGAGAGAGAATCTCCTCATCGTGCTGTTGATTATGGACTAGTTAAAGGATTAAGTAGAGAAGAAGAGTTGAGTGATTGGCCGCGAAAGCAATTTTCTGGTGATGGTCGGAAGAGATTTCAATCTTCTATGACATATAGTCTTAGTAACGGACAACCGCGTCAAAATCCAAGAGCGCTAATTGACGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCTTATGTTAGTTGAGCGGCTGGATAGAAATGGTATGGATAAAGTTATTTCAACATCATGGCAGAACACTGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACTCTAGTAGACCACAGTAGAAATAATAGTTTCACGCAACCAACTATAGGTTTCTCCTCAGAAAAGCCTGTTACTGTTGCAGCAAGTGCAACTTCTTCGGTGTCAAGGATCTTTCCTAGTCTCACGCCTAATATTGAGTACCGTCCACCAGTTTTGCCGGCAACTTTTGAAATGAGACACTCTATAAATGTGCATGCTCCTCGTCCTCCTAGCTTAAATCCTATATTTCCATTGAAGAATCCTGTTAGGAATCCATTTGAATCACTAAATGCTAATAGTACCATTGTGAGTCATGGTCTAAATAGACCTTTTCCAAATCAAGACCAATTGTTGCACGGTGTTGAGAACAATGATATCAATAAAAGAAACATGCATCAGTTACCTAATCACCCAGCTGGTCTGATTTCATCTAATCCGCAAAACAGCGTGCAAACACCGCAATTGCCATTTTTTCCATCTCAGGATCCAGCAGCATCACAATTTACTTATAGGATCCCTTTGCAAGGACATGGTACTTCTATAAGTAACCCCCTATCAAATGCACGTCCTGTTATGCCACTCCCTTTGCCTAGCCAAAGAATCCCAAACAACCCTTTACATTTCCAAGGGGTGCCATTGCGACCTTTTCCTCCAGCCGGCCCACATGCTCCACCCCAGATGCTACCTCATCCCAATCCTAGTCCTTTTGTGTCAAGCCAACAGCCATCTGCTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGCGTAATCTCATTGGCTAATCAAGCCCCTACACAGGATTTTGTTGGCATTGAGTTTGATCCTGATATTCTGAAGGTTCGTCATGAATCTGCAGTCAGTGCCTTATATGGTGATCTTCCTAGACAGTGCACAACTTGTGGCCTCCGATTCAAATCCCAAGATGAGCACAGCAGTCATATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAGAAACCCTCTCGCAAGTGGTTTGTCAGTGAGACAATGTGGCTTAGCGGTGCAGAGGCATTGGGAACTGAATCAGCTCCAGGTTTTTTGCCGACCGAGACCACTgaggaaaagaaagaagatgaagagttGGCAGTTCCTGCTGAAGAGGACCAGAATACATGTGCATTATGTGGAGAGCCTTTCGATGAGTTTTACAGTGATGAGACAGAGGAGTGGATGTATAGAGGAGCTGTATACCTTAATGCGCCTAATGGAATAATAACAGGCATGGACAGGTCACAGTTAGGACCCATTATTCATGCTAAATGCAGATCTGAATCTACTACCTCCCCATCTGAAGATTTTGTGATGGATGAAGGGGGCACGCATGAAGAAGGCAACCAAAGAAAACGAATGCGGGCATGA 2523 0.4197 MSNEIGQKPPPSILVGRFKALLKQREDDPRLRNSQPSTEEIVQIYELLLSELTCNVKPIITDLTIIAEQHREHAKGIAYAICARILEVSADQKLPSLYLLDSIVKNIGQEYIRHFSVRLPEVFCEAYRQVNPSLHSAMRHLFGTWSKVFPPSVLRKIDGQLQFSQVVNNQSSSVNPLRASESPRPTHGIHVNPKYIRQMEHSTSIMDSVVGERLDSTGTVGNANLGLVASKINQFVPSKVRRSSSPSRIGLDRHMPSYMDEYVADNPISRTVERESPHRAVDYGLVKGLSREEELSDWPRKQFSGDGRKRFQSSMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKLMLVERLDRNGMDKVISTSWQNTEEEEFDWEDMSPTLVDHSRNNSFTQPTIGFSSEKPVTVAASATSSVSRIFPSLTPNIEYRPPVLPATFEMRHSINVHAPRPPSLNPIFPLKNPVRNPFESLNANSTIVSHGLNRPFPNQDQLLHGVENNDINKRNMHQLPNHPAGLISSNPQNSVQTPQLPFFPSQDPAASQFTYRIPLQGHGTSISNPLSNARPVMPLPLPSQRIPNNPLHFQGVPLRPFPPAGPHAPPQMLPHPNPSPFVSSQQPSAGYSNLINSLMAQGVISLANQAPTQDFVGIEFDPDILKVRHESAVSALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGTESAPGFLPTETTEEKKEDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGIITGMDRSQLGPIIHAKCRSESTTSPSEDFVMDEGGTHEEGNQRKRMRA 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02057 840 Gene3D - 30 162 IPR008942 -
Tsu06g02057 840 MobiDBLite consensus disorder prediction 592 611 - -
Tsu06g02057 840 Pfam CID domain 55 156 IPR006569 -
Tsu06g02057 840 SUPERFAMILY ENTH/VHS domain 36 162 IPR008942 -
Tsu06g02057 840 MobiDBLite consensus disorder prediction 810 840 - -
Tsu06g02057 840 ProSiteProfiles CID domain profile. 37 165 IPR006569 -
Tsu06g02057 840 PANTHER POLYADENYLATION AND CLEAVAGE FACTOR HOMOLOG 4 12 815 - -
Tsu06g02057 840 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 12 815 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
Tsu06g02057 840 ProSitePatterns Zinc finger C2H2 type domain signature. 674 694 IPR013087 -
Tsu06g02057 840 MobiDBLite consensus disorder prediction 592 617 - -
Tsu06g02057 840 CDD CID_Pcf11 45 162 - -
Tsu06g02057 840 SMART 558neu5 40 162 IPR006569 -
Tsu06g02057 840 MobiDBLite consensus disorder prediction 823 840 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02057 Tsu-Chr6 25638263 25643254 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02057 612 840 C2H2 Transcription Factor Family AT4G04885 69.432 1.34e-106 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Tsu06g02057 CID 1.6e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02057 K14400 - gmx:100794796 865.914