Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02053 ATGAAATTAATCCTTAGGGCTAAGATCATAAGACTTTGGGAAGTTTTTGATTTCAATCGAACTAATGTGCCTTTTTCAATTGAAATGGTCTTAATGGATTCTCTTGGTGGTAGGATTCATGCAAGTATTAAAAAAACTCTGATTTACAAATTTAAGAATGACTTAATTGAGGGTAAAGTGTATTGTTTTGAAAATCTGGGTGTAGCAAGTAATGTTGGAGCATATCGTACTACGCACCACCCTTATAAGCTTAACTTTCAGTTTAGCTCTTTAGTTCAAAGGCTTTCCAATTTTCAGATACTTAGATCTCCATTTGCCTTTGTTCCAATTTATGAAGTTGTTGGTGGCAGTTATGACACCGATTTCTTAGTTGATGTGATTGGTTTCTTGACCGGTGTTGGTCAAGAACGTGAGATCACTAATCAAAATGGTACTTCAACAAAGCTGAATGTGATAGAGTTGGAAGCTCATGGGCATAAGCTGCAGTGTACTCTTTTAGGACAATATGTTGATGAACTTAATACCTTTATTGGAGCTGGTGATGTTAACAATACCGTAGTAATCGTACAGTTTGCTAAGGCAAAGACTTTTCAAGACAAAATTCATATCCAAAACTGCATGAAttgttctgttttgatttttaaccCAACATGTCCAGAAAGTGTTAACTTAAGGGCAAGtctTAGTGATGCTGTTGAGAATCTTTCTCCAATGCCTTTAACTCAATTCAATGGTGAAGCAAGAGTTCAACCAATTGATGAGTTTATGTACAATACTCCAAGGAGCACCTTGCAAGGGATCAAAGAAGCTACAAGTGCTGTCATACCAGATTCGCGGATGTTTTATTGTGAAAAGTGTAATAAGCATGTTCAAAAAGTTGTTCCTAgGTTTTGCATAAAAGTTAGAGTCATTGATCATACTGATTCTGTCACTTTAGTGATATTTGATAAAGAAGCAAGTTTGATATTGAACATGTCTTGTGCTGATATGATTCAAGGAGCTGATCCGGCTTTTGGTGTGCCACCTCTACTTGAGGGCTTGGTTGATAAGACATGGTTTTTTAAGGTTGAAGCTAAACCTTCTCATAATCCAAAGTTTGAGCAATCTTTTCGTGTTAGAAAGATTTGCACCGATGATGCAATCATTAAGCAGTTTAAGGACAAGTGGGATGGAGAAGATGCAAAGTTTCGGAAAAATAGAAATGAGGGTGGATCTTTGAGTACTTTGTTGAATAAAGGAAAGGATATTTTAGTTGGGGGATCATCTAATGTTTTATGTGAGATATTGTTTATGAAAAATGATTTACATAAAAGAAAGGAGTTGATCATTGAGGGAACACCTGTTGGAGTGTCTCAAGATTTGATGCTGAAATTTTCTTCTGCTGTTGTTAATCTTgctgatgatgataataatgaggCTTTTTGTGAGGTAGAGAGCGGTTCAGCTAATGTGCAAACGATTACTGCTGTTGCTGGTGAAGAGAAAACAGCCACTGATTTAGCTGAGGTGAGTATAACACCTTCAACTTCAGTGAAGCCTCCTACTGGTGGAAGGAAGAAATCATCTACTAAGAGATTGTCACCTCAGCATGAAGACAATGAGGTAGATGAAAATGCTCCTATGAAGTTGTTGAAGAGGGCTGTGAAGATTGAAAAGATACCCTAG 1665 0.3592 MKLILRAKIIRLWEVFDFNRTNVPFSIEMVLMDSLGGRIHASIKKTLIYKFKNDLIEGKVYCFENLGVASNVGAYRTTHHPYKLNFQFSSLVQRLSNFQILRSPFAFVPIYEVVGGSYDTDFLVDVIGFLTGVGQEREITNQNGTSTKLNVIELEAHGHKLQCTLLGQYVDELNTFIGAGDVNNTVVIVQFAKAKTFQDKIHIQNCMNCSVLIFNPTCPESVNLRASLSDAVENLSPMPLTQFNGEARVQPIDEFMYNTPRSTLQGIKEATSAVIPDSRMFYCEKCNKHVQKVVPRFCIKVRVIDHTDSVTLVIFDKEASLILNMSCADMIQGADPAFGVPPLLEGLVDKTWFFKVEAKPSHNPKFEQSFRVRKICTDDAIIKQFKDKWDGEDAKFRKNRNEGGSLSTLLNKGKDILVGGSSNVLCEILFMKNDLHKRKELIIEGTPVGVSQDLMLKFSSAVVNLADDDNNEAFCEVESGSANVQTITAVAGEEKTATDLAEVSITPSTSVKPPTGGRKKSSTKRLSPQHEDNEVDENAPMKLLKRAVKIEKIP 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02053 554 CDD RPA1_DBD_B_like 125 220 - -
Tsu06g02053 554 SUPERFAMILY Nucleic acid-binding proteins 105 229 IPR012340 -
Tsu06g02053 554 CDD RPA1_DBD_A_like 5 92 - -
Tsu06g02053 554 MobiDBLite consensus disorder prediction 506 522 - -
Tsu06g02053 554 Gene3D - 2 97 IPR012340 -
Tsu06g02053 554 Pfam Replication factor-A C terminal domain 278 332 IPR013955 -
Tsu06g02053 554 MobiDBLite consensus disorder prediction 506 540 - -
Tsu06g02053 554 PANTHER ANIMAL RPA1 DOMAIN PROTEIN 7 331 - -
Tsu06g02053 554 Gene3D - 100 236 IPR012340 -
Tsu06g02053 554 MobiDBLite consensus disorder prediction 524 540 - -
Tsu06g02053 554 PANTHER REPLICATION FACTOR A 1, RFA1 7 331 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu06g02053 554 Gene3D - 246 382 IPR012340 -
Tsu06g02053 554 Pfam Domain of unknown function DUF223 28 123 IPR003871 -
Tsu06g02053 554 SUPERFAMILY Nucleic acid-binding proteins 5 97 IPR012340 -
Tsu06g02053 554 SUPERFAMILY Nucleic acid-binding proteins 274 376 IPR012340 -
Tsu06g02053 554 CDD RPA1_DBD_C 274 375 IPR013955 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02053 Tsu-Chr6 25604259 25606975 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02053 31 323 Core DNA Replication Machinery Family AT2G06510 20.896 2.59e-07 51.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02053 - - mtr:MTR_4g036240 518.85