Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02039 atGGGCATGGGAAAAATAATGGTACAAAGTTCTACTAaggttttgtttattttcttggtTACTTTTGCCATTACTATTCCATGCCTTGAGGCAGGGATTGGTGAGTTTGATGATTTTCTTAAAGCCGAAGCTGAAGAAGCCCATAAAATTGCTCTTGATACTTATATTCCAGTTCCTGAAGAAGTTGTACATGATCTCAATGTTGATGTTCACTTagcaatggaagaagcaaacAGTACAAGGAGGGAAATGAAGGAAAAACATGGTGAAGGAGGACCATGTGAATCAAGCAACCCAATTGATAATTGTTGGAGGTGCAAAGCAGATTGGGCTAAAAATAGATATCAATTAGCAAAATGTGGTAAGGGCTTTGGAAGAAAGGCAGTTGGTGGGCTTGGAGGCCCAATTTATGTGGTAACTGATGAGTCAGATAATGACATGGTAACCCCAAAACCTGGTACACTTAGATTTGGTGTTGTACAAAAGGGACCATTGTGGATAATATTTGAACGTAGTATGATAATTAGATTGAACCAAGAATTGTTGGTTTCTTCTAACAAGACAATTGATGGTCGTGGAGTTAATGTTCAAATTAGGGATGGTGGTGGAATTACTATGCAATTTGTTAATAATGTTATTGTTCATGGTCTTCAtattacaaatattaaaaataaaccagGTGGTATGATTAGGGATTCTTTTGAGCATGTTGGAGTAAGAACAAGGAGTGATGGTGATGCTATTTCTATTTATGGATCTACTAATATTTGGGTTGATCATCTTTCACTCTCAAATTGTGAGGATGGTcttgttgatattatttatgGTTCTACCGGCATCACCGTCTCAAATTTGCACATGACAAAACATAATGATGTTATGTTATTTGGATCTAGTGATAAATACACAATAGACAAAATTATGCAAATAACAGTAGCATTCAACCACTTTGGTCAAGGATTGATTCAAAGAATGCCTAGGTGCAGGTATGGTTTTGTTCATGTTTTAAACAATGACTATACTCACTGGCAAATGTATGCAATTGGTGGTAGTTCAGGACCAACAATTCTTAGTCAAGGAAATCGATTCATTGCTCCCGATAACAACGCCGCCAAGGAAATCACACATAGAGATTATGCTCCACCTGAAGTTTGGAAGAATTGGCAATGGTCTTCAGAAATGGACTTGTTCATGAATGGTGCTAAGTTTGTTTCATCTGGTGCACCTATTAATAGGGCTCCCTACAAGAAAGGGTTTATGATGAAACCAAGAGATGGAACAGCTGTTAGTAGACTAACAAGGCATGCTGGTGCCCTAAATTGTATAATAGGGAAGCCTTGTTAG 1344 0.3571 MGMGKIMVQSSTKVLFIFLVTFAITIPCLEAGIGEFDDFLKAEAEEAHKIALDTYIPVPEEVVHDLNVDVHLAMEEANSTRREMKEKHGEGGPCESSNPIDNCWRCKADWAKNRYQLAKCGKGFGRKAVGGLGGPIYVVTDESDNDMVTPKPGTLRFGVVQKGPLWIIFERSMIIRLNQELLVSSNKTIDGRGVNVQIRDGGGITMQFVNNVIVHGLHITNIKNKPGGMIRDSFEHVGVRTRSDGDAISIYGSTNIWVDHLSLSNCEDGLVDIIYGSTGITVSNLHMTKHNDVMLFGSSDKYTIDKIMQITVAFNHFGQGLIQRMPRCRYGFVHVLNNDYTHWQMYAIGGSSGPTILSQGNRFIAPDNNAAKEITHRDYAPPEVWKNWQWSSEMDLFMNGAKFVSSGAPINRAPYKKGFMMKPRDGTAVSRLTRHAGALNCIIGKPC 447
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02039 447 PANTHER PECTATE LYASE 18-RELATED 11 447 IPR045032 GO:0030570
Tsu06g02039 447 PANTHER PECTATE LYASE 11 447 - -
Tsu06g02039 447 Pfam Pectate lyase, N terminus 33 83 IPR007524 GO:0030570
Tsu06g02039 447 Gene3D - 97 440 IPR012334 -
Tsu06g02039 447 Pfam Pectate lyase 181 363 IPR002022 -
Tsu06g02039 447 SUPERFAMILY Pectin lyase-like 98 438 IPR011050 -
Tsu06g02039 447 PRINTS Pollen allergen Amb family signature 120 137 IPR018082 -
Tsu06g02039 447 PRINTS Pollen allergen Amb family signature 144 169 IPR018082 -
Tsu06g02039 447 PRINTS Pollen allergen Amb family signature 180 196 IPR018082 -
Tsu06g02039 447 PRINTS Pollen allergen Amb family signature 244 265 IPR018082 -
Tsu06g02039 447 PRINTS Pollen allergen Amb family signature 324 343 IPR018082 -
Tsu06g02039 447 PRINTS Pollen allergen Amb family signature 346 365 IPR018082 -
Tsu06g02039 447 PRINTS Pollen allergen Amb family signature 388 412 IPR018082 -
Tsu06g02039 447 PRINTS Pollen allergen Amb family signature 418 441 IPR018082 -
Tsu06g02039 447 SMART amb_all 172 369 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02039 Tsu-Chr6 25235735 25238559 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02039 12 447 Polysaccharide Lyase AT5G15110 53.305 0.0 519
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02039 K01728 - gmx:100810615 709.138
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02039 06 25235735 25238559 Tsu04g03665 04 45677609 45684973 ECH
Tsu06g02039 06 25235735 25238559 Tsu06g02039 06 25235735 25238559 ECH
Tsu04g00106 04 1026414 1028550 Tsu06g02039 06 25235735 25238559 ECH