Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02029 ATGTTCGGCAACGCTCATCGTTTGTATGGTGTTTCAAACATACTGAAGATACTAAAGGAAATTGACGATGATAAAAAAGACGATGCAAtgaaatcaattatttttgaGTCGGATATTCGCGCAAAATTTCGTGTTGATGGATGTTTTGGTGTTATTAAGCACTATGAAGGTTTGTTAAAGCAGTCTATTAAAGAGTTAGATGATGTAGAAAGTGAAAATAATCATGATACAATGATGAgagcttcttcttcttatattaaTATACATCATGATGTTAAGAATATTCAAATTGATACAAATTTGAATATAATAAATTCTACGGATACAACAAGGGTTGTACAATTGAGTGATCTTAGCAATAGTGGTGGTGACAATGTCATGGAAGACAATTATGATGAAGAATTAAAGCTTGATGATGGTGTTAATGCACAAATTAGTACTGATtttgatttgaagaaaaaagaaagattatTAGATGGTGATAAATTAGCCATTTCGGATTATGAACTTGATATGTTTATTTATGGTAAACAACCATTTGTGCAAAAGGATGCAGCTGAATTCAGCAGTGTGGAATCAAACCAATCGCAGAATGATCGGTTGAAGAATTTGACACATATGGAAACAAGCACTCCATCTGATGTGAGCAAAATCAAATAA 660 0.2985 MFGNAHRLYGVSNILKILKEIDDDKKDDAMKSIIFESDIRAKFRVDGCFGVIKHYEGLLKQSIKELDDVESENNHDTMMRASSSYINIHHDVKNIQIDTNLNIINSTDTTRVVQLSDLSNSGGDNVMEDNYDEELKLDDGVNAQISTDFDLKKKERLLDGDKLAISDYELDMFIYGKQPFVQKDAAEFSSVESNQSQNDRLKNLTHMETSTPSDVSKIK 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02029 219 Coils Coil 52 72 - -
Tsu06g02029 219 MobiDBLite consensus disorder prediction 188 219 - -
Tsu06g02029 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 1 190 - -
Tsu06g02029 219 ProSiteProfiles LOB domain profile. 1 73 IPR004883 -
Tsu06g02029 219 Pfam Lateral organ boundaries (LOB) domain 2 68 IPR004883 -
Tsu06g02029 219 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02029 Tsu-Chr6 25079408 25080588 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02029 2 69 AS2 family AT3G13850 48.529 1.89e-15 71.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu06g02029 LOB 1.5e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02029 - - mtr:MTR_6g011200 129.413