Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02025 ATGAATATCATCAAAGCATACAAGTCTTGTGCAGCTTGCAAGTATCAAAGAAGAAAGTGTTCTAAAGATTGTCCGTTAGCTCCTTATTTTCCCGGCGATAAACCTAAAATGTTCGCTAATGCTTATCGTTTGTTCGGTGTTTCTAATCTATTGACCATACTAAAAGAAGTTAAAGATGAAGATAAAGATAAAGCAATGAAATCAATAATTTTTGAGTCGGATATTCGTGCAAGATTTCGGACTCATGGATGTCTCGGTGTTATTAAGATGTATGAGAGTGCTTTAAAGGAGTGTATTAAAGAATTAGATGATGTAGAAAGGTTATTAGATTATTGTAAGCTAAATTGTAATTCGGAACCTTCTACTAGTTCTCAAATTCCAATATTTAACAATATTGGTGATGCTCCtaattattatcacaataatATTAGTGATATCATCCCTCCTAGTGATGGTGACTATGCCATGGAAGACCATCCTAATTTGCTGGTAACAAAAGGATTATCCAATAATGAAGAATTAGTCCTTGATCGAGGTGTTGATGCACAAATCATTACAAATTTTGATTTggtgaaagagaaaatattttcagattatagTGGTGGTGACTATGCTATGGAAGACAATACTACTTTGATGGGAACAAAAGGATTATCTCATAATGAAGAATTAGTCCATGATCAAGGTGTTGATACAAAAATCTATGCAACTTTGGGGGAAGAGGGAATTTTTTCAgataattataatattgatgatCTTATTTCCTTTGGATAA 774 0.3101 MNIIKAYKSCAACKYQRRKCSKDCPLAPYFPGDKPKMFANAYRLFGVSNLLTILKEVKDEDKDKAMKSIIFESDIRARFRTHGCLGVIKMYESALKECIKELDDVERLLDYCKLNCNSEPSTSSQIPIFNNIGDAPNYYHNNISDIIPPSDGDYAMEDHPNLLVTKGLSNNEELVLDRGVDAQIITNFDLVKEKIFSDYSGGDYAMEDNTTLMGTKGLSHNEELVHDQGVDTKIYATLGEEGIFSDNYNIDDLISFG 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02025 257 Coils Coil 88 108 - -
Tsu06g02025 257 Pfam Lateral organ boundaries (LOB) domain 9 104 IPR004883 -
Tsu06g02025 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 8 121 - -
Tsu06g02025 257 ProSiteProfiles LOB domain profile. 8 109 IPR004883 -
Tsu06g02025 257 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 8 121 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02025 Tsu-Chr6 25027749 25028522 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02025 9 110 AS2 family AT3G47870 50.000 4.27e-32 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu06g02025 LOB 6.2e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02025 - - mtr:MTR_6g011200 176.407
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g02025 06 25027749 25028522 Tsu06g02025 06 25027749 25028522 ECH