Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02024 ATGGATATTCAACACACAAAAAGGGCTTGTGCTGCATGTGCATATCAAAGAAGAGGATGTAAAAGCAATTGTGTTTTAGCTCCTTATTTTCCGGCCGATAAATCAAAAGCGCTTCACAATGCTGTTCGTTTGTTTGGTATTTCGAACATGAAGAATGCACTAAACGAGATCAAGGATGACGgtgataaaaataatatgatgaaatcaattatttttgaaTCGGATATGCGTGCAAGATACCCGATTCATGGATGTCTTGGAATTATTAAGATGTATGAAGGTATGATAAAGGAGTCTTTGGAAGAGTTAGATCATGTAGAAGAGTTACTAAGTTTGTGCAAactattacaacaacaaaatcttGAACATTTCTTTTCAATGGATCATTCTTTGGTACCTTCTAGTTTGCACAATGTTGATAACATCATCTCTCATGATGTTAACAATATTCAAGTTCTTGGGAATCTTGATGATAACAATACTTCTTGTATGCAAAATTATCctttacaacaacaaaatattctACCTTACTTTTCGATGAATCATTCTTCGTTCTCAAATTCCCGATATCTACCTTACTTTTCAATGAATAATTCTTTGGTACCTTCTACTAGTTCTCAAGTTCCAAATTTTCCAATATCTAGCAATGTTGGTGACATCATCACTCATGATGTTAATAATACTACAAGTGATACAACAATGGTTGCAGAATTTAGTTGTGGGAGAAATAGTGGCGGTGACAATATTGCACAAGGAGAATCTGATCATGATCATGAATTGGACTCTCATGGTGGTGTTCATGCACAAGGATCATCTTAA 819 0.3236 MDIQHTKRACAACAYQRRGCKSNCVLAPYFPADKSKALHNAVRLFGISNMKNALNEIKDDGDKNNMMKSIIFESDMRARYPIHGCLGIIKMYEGMIKESLEELDHVEELLSLCKLLQQQNLEHFFSMDHSLVPSSLHNVDNIISHDVNNIQVLGNLDDNNTSCMQNYPLQQQNILPYFSMNHSSFSNSRYLPYFSMNNSLVPSTSSQVPNFPISSNVGDIITHDVNNTTSDTTMVAEFSCGRNSGGDNIAQGESDHDHELDSHGGVHAQGSS 272
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02024 272 MobiDBLite consensus disorder prediction 243 272 - -
Tsu06g02024 272 Coils Coil 89 109 - -
Tsu06g02024 272 Pfam Lateral organ boundaries (LOB) domain 9 106 IPR004883 -
Tsu06g02024 272 ProSiteProfiles LOB domain profile. 8 110 IPR004883 -
Tsu06g02024 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 6 170 - -
Tsu06g02024 272 PANTHER LOB DOMAIN-CONTAINING PROTEIN 27-RELATED 6 170 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02024 Tsu-Chr6 25023591 25024486 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02024 6 114 AS2 family AT3G47870 46.789 1.09e-27 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Tsu06g02024 LOB 4.7e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02024 - - mtr:MTR_6g011200 162.54