Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02009 ATGAAGATTGTCTCTTGGAATGTCCGTGGTCTGGGGGGGTTGGGGAAGAGGCAGGAGGTACGGAAGTTGGTTGAGAATCATAACCCTTCTCTGCTGTGTATTCAAGAAACTAAACTGCAGTTGGTTGATCCGGTTGTCTGCTCATCTCTTTGGGGTAATTCTTCTTTCGCTTTTTCTTATCGGCCCTCGATAGGTGCGTCGGGGGGGCTGTTAACTCTCTGGGATTCTTCTGAGGTAGATGTGTGGGCGTCCGAGAGTCACGATTTTGTCTTATGGTGTCATGGCCGTTTTTTGAAGTCTGGCGAGGAGTTTTCGGTGGCAAATGTGTATGTGCCCTGTGACCCTGGGGCTAAGCAACAGTTGTGGGACTCACTTTCGGTGAGGATCCAGGCGCTTAGGAGTTTTAGGGTATGTGTCTGCGGGGATTTTAATGCAGTGAGAAGTATTGAAGAGCGTCGGTCGGGTCGTGGTAGGCCGTCGTCCCTTGACCATCTCTCGTTTAATCGCTTTATTGAGGATAAAAGTCTTATTGATCTCCCGCTGAGTGGTCGCAAATTCACTTGGTTCAAAGGGGATGGTCTTTCGATGAGCCGTCTGGATAGGTTCTTGCTTTCTGGGGAGTGGTGTTTGACGTGGCCTAATTGTACTCAGGTAGCACGTCTGAGAGGGTTATCTGACCATTGTCCTCTGATTTTGGCTGCCAATGAGGAGGATTGGGGTCACCGTCCCTCGAGAATGCTTAAATGTTGGAAGGATGTTCCTGGCTATAACATTTTCATGAAAGATAAGTGGAATTCCTTTCAGGTCGATGGCTGGGGGTGGGGTGTAGGAGGAGAGACTTGGGTGTGGCGGAGGCAGTTGAGGGCGTGGGAGGatgagatgttgggggagtttCAGACTTTACTTTTTACTATATCCTTGCAGGCTCACTCTTCAGATAGATGGTTGTGGCAGCCGGATTTGGATAGCGGTTACTCTGTTCGTAGCGCATATCAGTTAATGACGCACAGCATGTTCGGATCTCTGTGGTCTCTCGTCAGTTCTTGGGTTGGTTCGGCTCCGGTGACAGCTCAGACTCTCTCggatcactttgttcagttcacGAGTTCAGCAGGTGATGTCACTTTTCATGAAAATGTGTCGTACTTTACCCGTCCTCAGTCTCAGGGGGAGAATGTAAATGACTTAGAGTCTGAGTCCGAGTTTCTAGTCTTGGGTCCCAGCCTCCCTAGAACACATGTTCATGCACCCACTTCTGAACCTGAGCCTACAAGTGTTCCTGGTCCTTCAATGTCTTCTGTTTTGGAGGAATCAACACCTTCAGGACCAACTCGGGGGTATCAAAGAAGAAAAACTACCAAACATTCTTATAAATTCACACAGTCCCTCTCTAAGCATACACACTCACACACTTCTCTCCTCAATTTCTATGAATCTCTTCTACTAGGTTTTTACAAATGGAAGCTCAATCACAGGAAGATGACGAATTTGTGCGGGACGAATCGATCTGTGAAGAATCTGGAAACGACACATTTGACAACGATGATGACAACGTTTATGATGATGAAACAAGTGAAACAACTAGAATCTATACCAATAGATTGCATTGCTGATATAATGAAGATTGATATGAAGAAAATATCCGTCGATGAAGTGgaaagttttgattttgctaGTCTGGAATGTGCTTACCAATTCTACTACTGGTATGGCAGAGTACTTGGGTTTTCAGTTCGCAAGAGTGTAGTTTTGAGGGATTGTGGTGGTGAAATTATTCAGCAGACCTTTGTGTGTTGTCGCGCGGGATTTAGAGAAGACCGAGGTCTAACACCGGCAAAAAGAAAGCGCcaggaaaaaaatgaaacaaggTGCGGATGTCTTGCAAAATTCAGAGTCCATGTAGACATTTTGACACGTCGTTGGTACGTTACAGTTTTCGAATTTGATCATAATCATGTGTTGTTGGATGGTTTGATGTGTAATATGTTACCCTCCCATAGAAAGATTAGTAAGAAAGATTTGGAGGATATTGAAAGTAATAGAAACGCTGGCATTAGACCCTACCAAATGTATGGTACAATTGCAAATTCATGTGGAGGTTATCACAAGGTAGGGTtcttaaaaaaagatatatacaaCCAGATAAGTAGACAAAAGAAATTATTATCCTTTGATGCTAGTGCTGCTGTAAAATATCTTCATGACCTCTGTAAGAAAGACGAACTGATGTTTGTGAGTCACACTATAGATGGTGAAAATAGGTTAGAAAGACTTTTTTGGTGTGATGGCAAAAGCATACTAAATTATTCAATATTTGGTGATGTTTTAGCCTTTGATGCAACTTACCGGAAGAACAAATACAACTGTCCATTTGTGATTTTCTCCGGTGTGAACCATCATAATCAAACCATTGTGTTTGCATCTGGGCTAGTTACAAGGGAGAATGAAGAAACCTATGTTTGGTTGTTAGAGCAATTATTGTTGGCAATGAAAGGCAAGGCTCCAGTGTCTGTCATAACAGATGGTGATTTAGCAATGAAAAATGCTATAAAAAAAGTGTTTCCCAAAGCGCATCACAGATTATGTGCATGGCATCTTCTTAGAAATGCATTGTCAAATGTTGGTATTCCTCAGATGATGCCGTATCTTAAAAGATGCATGCTTGGTGACATTGAGGTTACTACGTTTGAAGAACTATGGGCTGAAATGGTACAAAAGTTTGGATTAGAAGACAATAGTTGGATAAAAGAAATGtatgaaaaaaggaaaatgcgGTCTACCGCCCACATCAGGGGGTTTTTCTTTGCCGGATTAAGGACTACTTCTCGCTGCGAGGCACTCCACAGTCACATAAAACATTTTGTTCACTCTAAGATCAACTTATATGATTTTGTCCAACAATTTCATAGATGCCTCACGTATTTTCGATTTAGAGAAATTGAAGCTGATTTTCATTCTAATTATGGAGATCCTGTAATTCAAACTAGCCTCCCTGGTATTGAGAGATCGGCGGCTGCGCAGTTAACCAAGGAGATTTTTTGCATGTTTAGATTGGTActtaaaaaatctttgttattgaGGGTTATTGAATCACAAGAAATGACTAGTGGTTTTATTTACAAAGTGTCCAAATATTGTGGGAACGGTGATAGTTGTGTGCTGATGTATCTTGATATTGATAAACTTCCAAAGTGCTTGGTTCTTGAGAGGTGGACTAAGTTTGCAAAAGAATCGATTATCGGATGCCATCCAGGTGGAAGTCTTTATTGGGATTCACAAGTTGCTGCTAGATATGCCAGTATAGTGAAGTTGTCGAAGGATGTAGCTGAAATTGCGTATGATGATTTGGAGGAATACAACCGACTTGTCGGTGTCCTTAACACTGAATTTAGTCGTCTGAAAGAAAAGAAGGGAAATAACACCACTTTTGGTTCTGGGTTAAATAGTGATGGTGGTACATTGGATGAAAATGTGTTGGATCCTCCATTTGTTAGAACAAAGGGATGCGGCGCTAATCCGAATGCAACCCTGACAACAGTGGTATTCCTATTGGTAGTCTTAACACCCAGGCAAGTGTTGGTTATAGTTCACGACGTGGTATACTTGAAGATTTAA 3615 0.4111 MKIVSWNVRGLGGLGKRQEVRKLVENHNPSLLCIQETKLQLVDPVVCSSLWGNSSFAFSYRPSIGASGGLLTLWDSSEVDVWASESHDFVLWCHGRFLKSGEEFSVANVYVPCDPGAKQQLWDSLSVRIQALRSFRVCVCGDFNAVRSIEERRSGRGRPSSLDHLSFNRFIEDKSLIDLPLSGRKFTWFKGDGLSMSRLDRFLLSGEWCLTWPNCTQVARLRGLSDHCPLILAANEEDWGHRPSRMLKCWKDVPGYNIFMKDKWNSFQVDGWGWGVGGETWVWRRQLRAWEDEMLGEFQTLLFTISLQAHSSDRWLWQPDLDSGYSVRSAYQLMTHSMFGSLWSLVSSWVGSAPVTAQTLSDHFVQFTSSAGDVTFHENVSYFTRPQSQGENVNDLESESEFLVLGPSLPRTHVHAPTSEPEPTSVPGPSMSSVLEESTPSGPTRGYQRRKTTKHSYKFTQSLSKHTHSHTSLLNFYESLLLGFYKWKLNHRKMTNLCGTNRSVKNLETTHLTTMMTTFMMMKQVKQLESIPIDCIADIMKIDMKKISVDEVESFDFASLECAYQFYYWYGRVLGFSVRKSVVLRDCGGEIIQQTFVCCRAGFREDRGLTPAKRKRQEKNETRCGCLAKFRVHVDILTRRWYVTVFEFDHNHVLLDGLMCNMLPSHRKISKKDLEDIESNRNAGIRPYQMYGTIANSCGGYHKVGFLKKDIYNQISRQKKLLSFDASAAVKYLHDLCKKDELMFVSHTIDGENRLERLFWCDGKSILNYSIFGDVLAFDATYRKNKYNCPFVIFSGVNHHNQTIVFASGLVTRENEETYVWLLEQLLLAMKGKAPVSVITDGDLAMKNAIKKVFPKAHHRLCAWHLLRNALSNVGIPQMMPYLKRCMLGDIEVTTFEELWAEMVQKFGLEDNSWIKEMYEKRKMRSTAHIRGFFFAGLRTTSRCEALHSHIKHFVHSKINLYDFVQQFHRCLTYFRFREIEADFHSNYGDPVIQTSLPGIERSAAAQLTKEIFCMFRLVLKKSLLLRVIESQEMTSGFIYKVSKYCGNGDSCVLMYLDIDKLPKCLVLERWTKFAKESIIGCHPGGSLYWDSQVAARYASIVKLSKDVAEIAYDDLEEYNRLVGVLNTEFSRLKEKKGNNTTFGSGLNSDGGTLDENVLDPPFVRTKGCGANPNATLTTVVFLLVVLTPRQVLVIVHDVVYLKI 1204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02009 1204 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 554 1032 IPR031052 GO:0006355
Tsu06g02009 1204 PANTHER OS02G0262500 PROTEIN 554 1032 - -
Tsu06g02009 1204 Pfam Endonuclease/Exonuclease/phosphatase family 4 211 IPR005135 GO:0003824
Tsu06g02009 1204 MobiDBLite consensus disorder prediction 410 453 - -
Tsu06g02009 1204 Pfam MULE transposase domain 775 869 IPR018289 -
Tsu06g02009 1204 Coils Coil 1116 1136 - -
Tsu06g02009 1204 Pfam FAR1 DNA-binding domain 565 655 IPR004330 -
Tsu06g02009 1204 Gene3D Endonuclease/exonuclease/phosphatase 1 233 IPR036691 -
Tsu06g02009 1204 SUPERFAMILY DNase I-like 1 232 IPR036691 -
Tsu06g02009 1204 MobiDBLite consensus disorder prediction 425 447 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02009 Tsu-Chr6 24808748 24824657 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu06g02009 Exo_endo_phos 5.2e-08 CL0530
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02009 - - gmx:102662272 605.52