Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g02007 ATGGGAAGGCCTCCTTGTTGTGATAAATCCAATGTGAAAAGGGGTTTATGGACTCCTGAGGAAGATGCTAAAATTCTTGCTTATGTAGCCAAACATGGAATTGGCAATTGGACATTGGTTCCAAAGATAGCAGGCCTGAATAGGTGTGGCAAGAGTTGTAGGCTAAGATGGACTAATTACTTAAGACCTGATCTGAAGCATGATAGTTTCACAACTCAAGAAGAAGAGCTTATTATTACCCTTCATGCAGCTATAGGAAGCAGaTGGTCTTTAATTGCAAAAAGGCTACCTGGAAGAACAGATAATGATGTCAAGAATTATTGGaacacaaaattaagaaagaagCTTATGAAAATGGGAATTGATCCAGTAACTCATAAGCCAGTTTCACAAGTCCTTTCTGACTTAGGAAGCATTAGTAGTCTCACATCAACAACCACTCAAAGCCAAATGAATTATGTCAATAATAATTCAATTATGGAACACACAAAAGAGGAACAAATTCAATATTCATTGCAAAATGAACAAGTCCAATATCACCAATTCACAAACCAAGAGAATTTCCAACAAAATGTGTTAAGTGAAGTTGCATCTTCAAGTTCATCTTCATGTTCCTCTAATTTAACAAGGTTAAGCTCGCCGATTTCGCTAGCTCaaattaattctaattttgattgGAGTGAGTTTCTTCAAAACGATGACCCTTTTGCGTGGCAAGAGATTCAAAATATTCAACAACGTGACATACAAAGGGTAATGTCGTCATTGAGCATCTCTAGGGGTTTAATGCAAAATGAAGGTGAaatttccaataataataataataataatttcaatggTAATGGAAATGATAAACAAGGTGGTTCAAGTGAAGGTTTTGAGAATGTTACTTGTGTTGCAAGCAAAGAATATAAAGTTAATAAGCAATGTGAAGGAAAATCATTTTCAGGGAATTCATTTGTGGATGGCATTTTGGACAAAGATAGTGAGATAAGGGCTGCATTTCCTGAATTATTGGataattcttttgattattaA 1038 0.3353 MGRPPCCDKSNVKRGLWTPEEDAKILAYVAKHGIGNWTLVPKIAGLNRCGKSCRLRWTNYLRPDLKHDSFTTQEEELIITLHAAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISSLTSTTTQSQMNYVNNNSIMEHTKEEQIQYSLQNEQVQYHQFTNQENFQQNVLSEVASSSSSSCSSNLTRLSSPISLAQINSNFDWSEFLQNDDPFAWQEIQNIQQRDIQRVMSSLSISRGLMQNEGEISNNNNNNNFNGNGNDKQGGSSEGFENVTCVASKEYKVNKQCEGKSFSGNSFVDGILDKDSEIRAAFPELLDNSFDY 345
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g02007 345 Gene3D - 68 131 - -
Tsu06g02007 345 CDD SANT 69 112 IPR001005 -
Tsu06g02007 345 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu06g02007 345 SMART sant 13 63 IPR001005 -
Tsu06g02007 345 SMART sant 66 114 IPR001005 -
Tsu06g02007 345 Gene3D - 7 67 - -
Tsu06g02007 345 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Tsu06g02007 345 CDD SANT 17 61 IPR001005 -
Tsu06g02007 345 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Tsu06g02007 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 116 IPR017930 -
Tsu06g02007 345 PANTHER F14D16.11-RELATED 1 345 - -
Tsu06g02007 345 Pfam Myb-like DNA-binding domain 69 110 IPR001005 -
Tsu06g02007 345 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Tsu06g02007 345 MobiDBLite consensus disorder prediction 267 290 - -
Tsu06g02007 345 PANTHER F14D16.11-RELATED 1 345 - -
Tsu06g02007 345 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g02007 Tsu-Chr6 24792563 24795055 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g02007 1 345 MYB Transcription Factor Family AT3G28470 48.485 3.44e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu06g02007 Myb_DNA-binding 4.8e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g02007 K09422 - gmx:100811448 399.823