Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Tsu06g01998 | ATGGGTAGCGGTGATCATAAAAATGTTTCTATtgttaagaaaaagaaaaagaaaaatggttctTTTAAGTCCATTTTCATGCATGCTGATGTTCTTGATTATTTTTACATGATTTTTGGTTTATTGGGGTCTATTGGTGATGGAATAATGACCCCTTTAGTTTTGTTTATTACAAGCAAAATTATGAACTCTCTTGGTAATGCTTCTGGCACATCAAACAACAATTTTGTTCATAACATCAATAAGAATGCTGCTGTTTTGTTATATTTGGCTTGTGTCTCTTTTGTTGCTTGCTTCTTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCTAGGTACTTAAAAGCTGTTCTAAGACAAGAAGTAGCATATTTTGATTTGCATGTCACAAGCACATCAGAGGTCATCACCAGTGTCTCTAATGACAGCCTAGTAATTCAAGATGTCCTTAGTGAAaagGTTCCAAATTTTTTGATGAATGCATCAATGTTCATTGGGAGCTACATAGTAGCATTTGCATTGTTATGGAGATTGGCCATTGCTGGATTCCCTTTTGTCATTTTCCTTGTGATTCCTGGTTTGATGTATGGAAGGACTTTGATGGGATTGGCTAAGAAAATCAGAGAAGAGTACAATCAAGCCGGTACAATAGCGGAACAAGCAATATCTTCAATCAGAACTGTTTATTCATTTGCAGGAGAAAGCAAAACCATAGCTGCTTTCTCTGATGCTTTGGATGGATCAGTGAAGTTAGGATTGAAACAAGGATTAGCTAAAGGTTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGTCTTTTATGTCCTATTATGGTAGCAGAATGGTCATGTATCATGGTGCTAAAGGTGGTACTGTTTTTGCAGTTGGAGCATCACTAGCACTTGGTGGATTGGCATTAGGTGCTGGTTTATCAAATGTGAAGTACTTTTCAGAAGCAAGTGTAGCAGGAGAAAGAATAATGGAAGTGATAAAAAGAGTTCCAAAGATAGATTCAGAAAACATGGAAGGTGAAATTCTAGAGAATGTATTAGGAGAAGTTGAGTTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTAATCTTAAATGATTTTAGCTTAAAAGTTCCATCAGGAAAAACAGTAGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTGCAAAGATTTTATGATCCAATTGGTGGAGAAATTCTTGTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAATGGCTTAGATCTCAAATGGGATTAGTGAGTCAAGAACCTGCTTTGTTTGCAACAAGTATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACCTATGAAGAAATTGTTGATGCTGCTAAAGCTTCTAATGCtcataatttcatttcattattgCCACAAGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAAATGTCGGGAGGACAAAAGCAAAGAATTGCCATTGCAAGAGCCATAATAAAAATGCCAAAAATTCTTTTGCTAGACGAAGCAACGAGTGCACTCGATTCTGAATCCGAACGAGTAGTCCAAGAAGCTTTGGACAAAGCTGCAGTTGGACGGACCACCATCGTCATTGCTCACCGCTTGTCCACCATTCAAAATGCGGACATCATTGCGGTCGTCCAAAATGGTAAGGTCATGGAAACAGGATCGCACGAAAGCCTCATGCAAAATGATGATTCTCTTTACACCTCCCTCGTTCGtctacaacaaacaaaaaatgacCAAAATGATGACACTTCATCTATCATGAATAGAGATCACATGCAAAACACGAGTAGTCGTAGACTCGTGAGTCATTCTAGCTCTTTCAACTCAATGACTCGCGGTGATGATATCGTTAATTATAACAGTGGTGGTGATGATATCGTTAATAATGTTGTCATTGATGatcataataataatggtaataaaaataagaatgttGAGGTTCCTTCGTTTCGAAGGTTGTTGGCAATGAATCTACCAGAGTGGAAGCAAGCATGTTTGGGTTGTTTAAATGCGCTTTTATTCGGTGCGATTCAACCTGTATATGCTTTTGCAATGGGGTCGGTTATATCGGTTTATTTTCTCGAGGACCATGATGAGATTAAGAAGCAAATTAGGATATATGTGTTTTCTTTTCTAGGGTTGGCTGTGTCCTCAATGGTTTTTAATATTCTTCAACATTATAGCTTTGCTTACATGGGAGAGTATTTGACTAAGAGGGTTAGAGAAAGAATGTTTTCCAAGATACTCACTTTTGAAGTAGGTTGGTTTGATGAGGATCAAAATTCTACAGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCTTTGGTTGGTGATAGATTGGCTCTAGTGGTACAAACTATATCAGCAGTTGTAATAGCATTCACAATGGGTCTAGTCATTGCATGGAGACTAGCCATTGTTATGATAGCAGTTCAACCAATTATCATATGTTGTTTCTACACAAGGCGTGTCCTTCTTAAGAACATGTCAAAAAAAGCAATTAAGGCTCAAGATGAATGTAGCAAAATAGCTGCAGAAGCTGTTTCAAATCTAAGAACCATTAATGCTTTTTCATCTCAAGATAGAATCCTCAAAATCCTTGAAAAAGCCCAACAAGGCCCAAGTCATGAAAGCATTAGACAGTCTTGGTATGCAGGTATTGGGCTTGCTTGTTCACAAAGCCTCAACTTTTGTACTTGGGCCTTGGACTTTTGGTATGGTGGAAAACTTGTGTCACAAGGTTATATTTCATCAAAGGCATTGTTTGAGACTTTTATGATTTTGGTAAGCACAGGAAGAGTTATTGCCGATGCCGGTAGCATGACTAATGATCTTGCTAAAGGCTCTGACGCCGTTGGATCGGTTTTCGCAATTCTTGATAGGTATACAAAAATTGAGCCGGATGATATAGAAGGTCACAAAACCGAAAAATTAATAGGAAAAATTGAACTCCATGATGTACATTTTGCATATCCGGCTAGACCTAATGTGATGATCTTTCAAGGGTTCTCGATTAAAATTGATGCCGGAAAATCCACGGCTTTGGTCGGGGAAAGTGGTTCCGGAAAATCGACAATCATAGGACTAATTGAGAGATTCTATGATCCTTTTAAAGGGACAGTGACAATTGATGGTAGAGATATAAAATCTTATAATCTAAGGTCATTAAGGAAACACATTGCACTTGTGAGTCAAGAGCCAACATTGTTTGGTGGTACCATAAGGGAAAATATTGCATATGGAGCTTATGATGATAAGGTTGATGAGAGTGAGATTATTGAGGCATCAAAAGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAAACATTGTGTGGTGAAAGAGGAGTTCAACTAAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAAAATCCTAAGGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAATTAGTGCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTAGCTCATAGATTGAGTACTATACAAAATTGTGATTTGATTGCAGTTTTGGATAAAGGAAGTATTGTTGAGAAAGGAACACATTCATCTTTGTTGTCTAAAGGACCAAGTGGAGCTTATTACTCTTTGGTAAGTCTACAAAGAAGGCCAACCAACACAATTGTTGATTCTTCACATGAAATCAACTAA | 3813 | 0.3695 | MGSGDHKNVSIVKKKKKKNGSFKSIFMHADVLDYFYMIFGLLGSIGDGIMTPLVLFITSKIMNSLGNASGTSNNNFVHNINKNAAVLLYLACVSFVACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFIGSYIVAFALLWRLAIAGFPFVIFLVIPGLMYGRTLMGLAKKIREEYNQAGTIAEQAISSIRTVYSFAGESKTIAAFSDALDGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSRMVMYHGAKGGTVFAVGASLALGGLALGAGLSNVKYFSEASVAGERIMEVIKRVPKIDSENMEGEILENVLGEVEFNHVEFVYPSRPESVILNDFSLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILVDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISLLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKAAVGRTTIVIAHRLSTIQNADIIAVVQNGKVMETGSHESLMQNDDSLYTSLVRLQQTKNDQNDDTSSIMNRDHMQNTSSRRLVSHSSSFNSMTRGDDIVNYNSGGDDIVNNVVIDDHNNNGNKNKNVEVPSFRRLLAMNLPEWKQACLGCLNALLFGAIQPVYAFAMGSVISVYFLEDHDEIKKQIRIYVFSFLGLAVSSMVFNILQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDEDQNSTGAICSRLAKEANVVRSLVGDRLALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIICCFYTRRVLLKNMSKKAIKAQDECSKIAAEAVSNLRTINAFSSQDRILKILEKAQQGPSHESIRQSWYAGIGLACSQSLNFCTWALDFWYGGKLVSQGYISSKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDIEGHKTEKLIGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGTVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGAYDDKVDESEIIEASKAANAHDFISSLKDGYETLCGERGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSIVEKGTHSSLLSKGPSGAYYSLVSLQRRPTNTIVDSSHEIN | 1270 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Tsu06g01998 | 1270 | SUPERFAMILY | ABC transporter transmembrane region | 673 | 998 | IPR036640 | GO:0005524|GO:0016021 | |
Tsu06g01998 | 1270 | ProSitePatterns | ABC transporters family signature. | 1155 | 1169 | IPR017871 | GO:0005524 | |
Tsu06g01998 | 1270 | Pfam | ABC transporter | 1033 | 1183 | IPR003439 | GO:0005524 | |
Tsu06g01998 | 1270 | CDD | ABC_6TM_Pgp_ABCB1_D1_like | 37 | 335 | - | - | |
Tsu06g01998 | 1270 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 355 | 600 | IPR027417 | - | |
Tsu06g01998 | 1270 | SUPERFAMILY | ABC transporter transmembrane region | 33 | 346 | IPR036640 | GO:0005524|GO:0016021 | |
Tsu06g01998 | 1270 | MobiDBLite | consensus disorder prediction | 603 | 632 | - | - | |
Tsu06g01998 | 1270 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 38 | 327 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Tsu06g01998 | 1270 | PANTHER | ABC TRANSPORTER B FAMILY PROTEIN | 22 | 1260 | - | - | |
Tsu06g01998 | 1270 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY B | 22 | 1260 | IPR039421 | - | |
Tsu06g01998 | 1270 | CDD | ABC_6TM_Pgp_ABCB1_D2_like | 681 | 997 | - | - | |
Tsu06g01998 | 1270 | SMART | AAA_5 | 1041 | 1235 | IPR003593 | - | |
Tsu06g01998 | 1270 | SMART | AAA_5 | 389 | 687 | IPR003593 | - | |
Tsu06g01998 | 1270 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1009 | 1255 | IPR027417 | - | |
Tsu06g01998 | 1270 | Pfam | ABC transporter | 380 | 529 | IPR003439 | GO:0005524 | |
Tsu06g01998 | 1270 | Gene3D | ABC transporter type 1, transmembrane domain | 86 | 988 | IPR036640 | GO:0005524|GO:0016021 | |
Tsu06g01998 | 1270 | Pfam | ABC transporter transmembrane region | 693 | 961 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Tsu06g01998 | 1270 | Pfam | ABC transporter transmembrane region | 37 | 303 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Tsu06g01998 | 1270 | ProSitePatterns | ABC transporters family signature. | 501 | 515 | IPR017871 | GO:0005524 | |
Tsu06g01998 | 1270 | Coils | Coil | 858 | 878 | - | - | |
Tsu06g01998 | 1270 | Gene3D | - | 360 | 613 | IPR027417 | - | |
Tsu06g01998 | 1270 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1014 | 1252 | IPR003439 | GO:0005524 | |
Tsu06g01998 | 1270 | CDD | ABC_MTABC3_MDL1_MDL2 | 362 | 600 | - | - | |
Tsu06g01998 | 1270 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 698 | 979 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Tsu06g01998 | 1270 | Gene3D | - | 1004 | 1263 | IPR027417 | - | |
Tsu06g01998 | 1270 | CDD | ABC_MTABC3_MDL1_MDL2 | 1014 | 1255 | - | - | |
Tsu06g01998 | 1270 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 362 | 598 | IPR003439 | GO:0005524 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Tsu06g01998 | Tsu-Chr6 | 24634364 | 24642714 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Tsu06g01998 | 693 | 1268 | Calmodulin-binding Proteins | AT2G36910 | 36.505 | 3.88e-112 | 380 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Tsu06g01998 | K05658 | - | gmx:100807709 | 1986.46 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Tsu06g01998 | 06 | 24634364 | 24642714 | Tsu06g01998 | 06 | 24634364 | 24642714 | ECH |