Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01998 ATGGGTAGCGGTGATCATAAAAATGTTTCTATtgttaagaaaaagaaaaagaaaaatggttctTTTAAGTCCATTTTCATGCATGCTGATGTTCTTGATTATTTTTACATGATTTTTGGTTTATTGGGGTCTATTGGTGATGGAATAATGACCCCTTTAGTTTTGTTTATTACAAGCAAAATTATGAACTCTCTTGGTAATGCTTCTGGCACATCAAACAACAATTTTGTTCATAACATCAATAAGAATGCTGCTGTTTTGTTATATTTGGCTTGTGTCTCTTTTGTTGCTTGCTTCTTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCTAGGTACTTAAAAGCTGTTCTAAGACAAGAAGTAGCATATTTTGATTTGCATGTCACAAGCACATCAGAGGTCATCACCAGTGTCTCTAATGACAGCCTAGTAATTCAAGATGTCCTTAGTGAAaagGTTCCAAATTTTTTGATGAATGCATCAATGTTCATTGGGAGCTACATAGTAGCATTTGCATTGTTATGGAGATTGGCCATTGCTGGATTCCCTTTTGTCATTTTCCTTGTGATTCCTGGTTTGATGTATGGAAGGACTTTGATGGGATTGGCTAAGAAAATCAGAGAAGAGTACAATCAAGCCGGTACAATAGCGGAACAAGCAATATCTTCAATCAGAACTGTTTATTCATTTGCAGGAGAAAGCAAAACCATAGCTGCTTTCTCTGATGCTTTGGATGGATCAGTGAAGTTAGGATTGAAACAAGGATTAGCTAAAGGTTTAGCCATAGGAAGCAATGGTGTTGTTTTTGCTATATGGTCTTTTATGTCCTATTATGGTAGCAGAATGGTCATGTATCATGGTGCTAAAGGTGGTACTGTTTTTGCAGTTGGAGCATCACTAGCACTTGGTGGATTGGCATTAGGTGCTGGTTTATCAAATGTGAAGTACTTTTCAGAAGCAAGTGTAGCAGGAGAAAGAATAATGGAAGTGATAAAAAGAGTTCCAAAGATAGATTCAGAAAACATGGAAGGTGAAATTCTAGAGAATGTATTAGGAGAAGTTGAGTTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTAATCTTAAATGATTTTAGCTTAAAAGTTCCATCAGGAAAAACAGTAGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTGCAAAGATTTTATGATCCAATTGGTGGAGAAATTCTTGTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAATGGCTTAGATCTCAAATGGGATTAGTGAGTCAAGAACCTGCTTTGTTTGCAACAAGTATTAAGGAGAATATACTTTTTGGAAGAGAGGATGCTACCTATGAAGAAATTGTTGATGCTGCTAAAGCTTCTAATGCtcataatttcatttcattattgCCACAAGGATATGATACTCAGGTTGGGGAGAGAGGAGTTCAAATGTCGGGAGGACAAAAGCAAAGAATTGCCATTGCAAGAGCCATAATAAAAATGCCAAAAATTCTTTTGCTAGACGAAGCAACGAGTGCACTCGATTCTGAATCCGAACGAGTAGTCCAAGAAGCTTTGGACAAAGCTGCAGTTGGACGGACCACCATCGTCATTGCTCACCGCTTGTCCACCATTCAAAATGCGGACATCATTGCGGTCGTCCAAAATGGTAAGGTCATGGAAACAGGATCGCACGAAAGCCTCATGCAAAATGATGATTCTCTTTACACCTCCCTCGTTCGtctacaacaaacaaaaaatgacCAAAATGATGACACTTCATCTATCATGAATAGAGATCACATGCAAAACACGAGTAGTCGTAGACTCGTGAGTCATTCTAGCTCTTTCAACTCAATGACTCGCGGTGATGATATCGTTAATTATAACAGTGGTGGTGATGATATCGTTAATAATGTTGTCATTGATGatcataataataatggtaataaaaataagaatgttGAGGTTCCTTCGTTTCGAAGGTTGTTGGCAATGAATCTACCAGAGTGGAAGCAAGCATGTTTGGGTTGTTTAAATGCGCTTTTATTCGGTGCGATTCAACCTGTATATGCTTTTGCAATGGGGTCGGTTATATCGGTTTATTTTCTCGAGGACCATGATGAGATTAAGAAGCAAATTAGGATATATGTGTTTTCTTTTCTAGGGTTGGCTGTGTCCTCAATGGTTTTTAATATTCTTCAACATTATAGCTTTGCTTACATGGGAGAGTATTTGACTAAGAGGGTTAGAGAAAGAATGTTTTCCAAGATACTCACTTTTGAAGTAGGTTGGTTTGATGAGGATCAAAATTCTACAGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCTTTGGTTGGTGATAGATTGGCTCTAGTGGTACAAACTATATCAGCAGTTGTAATAGCATTCACAATGGGTCTAGTCATTGCATGGAGACTAGCCATTGTTATGATAGCAGTTCAACCAATTATCATATGTTGTTTCTACACAAGGCGTGTCCTTCTTAAGAACATGTCAAAAAAAGCAATTAAGGCTCAAGATGAATGTAGCAAAATAGCTGCAGAAGCTGTTTCAAATCTAAGAACCATTAATGCTTTTTCATCTCAAGATAGAATCCTCAAAATCCTTGAAAAAGCCCAACAAGGCCCAAGTCATGAAAGCATTAGACAGTCTTGGTATGCAGGTATTGGGCTTGCTTGTTCACAAAGCCTCAACTTTTGTACTTGGGCCTTGGACTTTTGGTATGGTGGAAAACTTGTGTCACAAGGTTATATTTCATCAAAGGCATTGTTTGAGACTTTTATGATTTTGGTAAGCACAGGAAGAGTTATTGCCGATGCCGGTAGCATGACTAATGATCTTGCTAAAGGCTCTGACGCCGTTGGATCGGTTTTCGCAATTCTTGATAGGTATACAAAAATTGAGCCGGATGATATAGAAGGTCACAAAACCGAAAAATTAATAGGAAAAATTGAACTCCATGATGTACATTTTGCATATCCGGCTAGACCTAATGTGATGATCTTTCAAGGGTTCTCGATTAAAATTGATGCCGGAAAATCCACGGCTTTGGTCGGGGAAAGTGGTTCCGGAAAATCGACAATCATAGGACTAATTGAGAGATTCTATGATCCTTTTAAAGGGACAGTGACAATTGATGGTAGAGATATAAAATCTTATAATCTAAGGTCATTAAGGAAACACATTGCACTTGTGAGTCAAGAGCCAACATTGTTTGGTGGTACCATAAGGGAAAATATTGCATATGGAGCTTATGATGATAAGGTTGATGAGAGTGAGATTATTGAGGCATCAAAAGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAAACATTGTGTGGTGAAAGAGGAGTTCAACTAAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAAAATCCTAAGGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAATTAGTGCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTAGCTCATAGATTGAGTACTATACAAAATTGTGATTTGATTGCAGTTTTGGATAAAGGAAGTATTGTTGAGAAAGGAACACATTCATCTTTGTTGTCTAAAGGACCAAGTGGAGCTTATTACTCTTTGGTAAGTCTACAAAGAAGGCCAACCAACACAATTGTTGATTCTTCACATGAAATCAACTAA 3813 0.3695 MGSGDHKNVSIVKKKKKKNGSFKSIFMHADVLDYFYMIFGLLGSIGDGIMTPLVLFITSKIMNSLGNASGTSNNNFVHNINKNAAVLLYLACVSFVACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVSNDSLVIQDVLSEKVPNFLMNASMFIGSYIVAFALLWRLAIAGFPFVIFLVIPGLMYGRTLMGLAKKIREEYNQAGTIAEQAISSIRTVYSFAGESKTIAAFSDALDGSVKLGLKQGLAKGLAIGSNGVVFAIWSFMSYYGSRMVMYHGAKGGTVFAVGASLALGGLALGAGLSNVKYFSEASVAGERIMEVIKRVPKIDSENMEGEILENVLGEVEFNHVEFVYPSRPESVILNDFSLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILVDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISLLPQGYDTQVGERGVQMSGGQKQRIAIARAIIKMPKILLLDEATSALDSESERVVQEALDKAAVGRTTIVIAHRLSTIQNADIIAVVQNGKVMETGSHESLMQNDDSLYTSLVRLQQTKNDQNDDTSSIMNRDHMQNTSSRRLVSHSSSFNSMTRGDDIVNYNSGGDDIVNNVVIDDHNNNGNKNKNVEVPSFRRLLAMNLPEWKQACLGCLNALLFGAIQPVYAFAMGSVISVYFLEDHDEIKKQIRIYVFSFLGLAVSSMVFNILQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDEDQNSTGAICSRLAKEANVVRSLVGDRLALVVQTISAVVIAFTMGLVIAWRLAIVMIAVQPIIICCFYTRRVLLKNMSKKAIKAQDECSKIAAEAVSNLRTINAFSSQDRILKILEKAQQGPSHESIRQSWYAGIGLACSQSLNFCTWALDFWYGGKLVSQGYISSKALFETFMILVSTGRVIADAGSMTNDLAKGSDAVGSVFAILDRYTKIEPDDIEGHKTEKLIGKIELHDVHFAYPARPNVMIFQGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGTVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGAYDDKVDESEIIEASKAANAHDFISSLKDGYETLCGERGVQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSIVEKGTHSSLLSKGPSGAYYSLVSLQRRPTNTIVDSSHEIN 1270
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01998 1270 SUPERFAMILY ABC transporter transmembrane region 673 998 IPR036640 GO:0005524|GO:0016021
Tsu06g01998 1270 ProSitePatterns ABC transporters family signature. 1155 1169 IPR017871 GO:0005524
Tsu06g01998 1270 Pfam ABC transporter 1033 1183 IPR003439 GO:0005524
Tsu06g01998 1270 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Tsu06g01998 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Tsu06g01998 1270 SUPERFAMILY ABC transporter transmembrane region 33 346 IPR036640 GO:0005524|GO:0016021
Tsu06g01998 1270 MobiDBLite consensus disorder prediction 603 632 - -
Tsu06g01998 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01998 1270 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 22 1260 - -
Tsu06g01998 1270 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 1260 IPR039421 -
Tsu06g01998 1270 CDD ABC_6TM_Pgp_ABCB1_D2_like 681 997 - -
Tsu06g01998 1270 SMART AAA_5 1041 1235 IPR003593 -
Tsu06g01998 1270 SMART AAA_5 389 687 IPR003593 -
Tsu06g01998 1270 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1009 1255 IPR027417 -
Tsu06g01998 1270 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Tsu06g01998 1270 Gene3D ABC transporter type 1, transmembrane domain 86 988 IPR036640 GO:0005524|GO:0016021
Tsu06g01998 1270 Pfam ABC transporter transmembrane region 693 961 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01998 1270 Pfam ABC transporter transmembrane region 37 303 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01998 1270 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Tsu06g01998 1270 Coils Coil 858 878 - -
Tsu06g01998 1270 Gene3D - 360 613 IPR027417 -
Tsu06g01998 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1014 1252 IPR003439 GO:0005524
Tsu06g01998 1270 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Tsu06g01998 1270 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 698 979 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01998 1270 Gene3D - 1004 1263 IPR027417 -
Tsu06g01998 1270 CDD ABC_MTABC3_MDL1_MDL2 1014 1255 - -
Tsu06g01998 1270 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01998 Tsu-Chr6 24634364 24642714 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01998 693 1268 Calmodulin-binding Proteins AT2G36910 36.505 3.88e-112 380
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01998 K05658 - gmx:100807709 1986.46
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01998 06 24634364 24642714 Tsu06g01998 06 24634364 24642714 ECH