Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01997 ATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTTAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAGCATTCTTGAAGTGCCTTCATATTTTTAGCAACGGAATAATTAGAAGGAATGATTTACAAAATTTGGTGACCGATTTACTTGGAAAGCATCCTGATCTCATGAGCGAATTCAATGATTTCTTAGAGCGTTGTGAAAATATTGACGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTAGCTACTGACGGTCATTCATCAAGATCAACAAAGTTGGAAGACAAAGAACACAAGCGTGACATGGATGGAGCTAAAGAGAAGGAGAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAACTTGACCTTAGTGACTGCAAACGTTGTACTCCCAGCTACAGGCTTCTACCTGCTGATTATCCAATTCCTACGGCTAGTCAGCGATCTGATCTTGGTGCACAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCCGAAATCAATACGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGTTGGATATGTTATTAGAGTCTGTGAGTTCTGCTGCTAAACGAGCTGAAGAGTTGTATAACAGCATTATTGAAAATAAGATCAGTGTGGAGAGTCTGAGTCGTATTGAAGATCACTTCACTGTTCTAAATCTAAGATGCATTGAACGCCTATATGGTGACCATGGTCTTGATGTCCTAGACATACTGCGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGACTAGGTGCCGTTCAGATTTCAATAAAGTTTGGGCTGACATTTATTCCAAAAATCACTACAAATCACTTGATCATCGTAGCTTCTATTTCAAGCAACAAGATTCGAAGAACTTGAGCACAAAATCTTTGGTGACTGAgattaaagaaattaaagagaAGCAGCAAAAAGAGGATGATATCGTTCAGTCTATTGCTGCTGGAGCTAAACATCCCCTCATTCCACATCTGGAATTTGACTTTTCTGATGCTGAAATTCACGAGGACCTGTATAAACTTGTTCGTTATTCATGCGAGGAGGTATTCTCAAGTAAAgagttattcaataaaattatgagGCTCTGGAGTACCTTCTTGGAACCAATGCTTGGTGTTACTTCCCAATCACACGGAACAGAAAGGATAGAGGACAGGAAAGTAGGACAAAACGCTCGGAGTTCTGTTGCACCCAATGTAGAAGGTGATGGAAGCCCTCACAGAGACTCAATTTCAAGGTTACCAAAAtctgagaagaatgaagttgaTGGTAGAGTGACTGAAGTGAAAAATGGTCACCAGACTAGTGTAGCGGCCAATGGTAAAGAAAATGGTTCTGTTGGTAGAGATGATCTTTTAATGGATAATAAAGGGCagaaaagtgttgaatccagtGATAAAGCCCCTGGATTTGGTAAACAGTTCTCATCCGATGAACAAGCAGCGAGAAACTCTGCATCTGTCACAATTAGAGGCGAGAGCAGTGTGAACAGAACCAACTTAGATATGTCTCCAGGACGCGTACTTACTCCATCCCGACCTACTGATGCTGATGTCTCTGTAACCATAGCCAAGTCTCCGTGTTCTAATGTACCTTTGGTGGAGGGGTGTGACGTTGCCGCTCCAGTACCACCAGTTGCCAATGGCATGTTAGTTGAGAGCAGTAAAGTTAAAAGCCATGAAGAATCTTCTGTGCCTTGCAAAGTTGAAAAAGAAGAGGGTGAGTTATCCCCAAATGCCGACTCTGAGGAGGATAACTTTGTTGCCTATGAAGATTCAAATGTGCAGTCAAAGCACGATGTCGATAGTAGCAAATACGAGTCTAAAAATGGAGAGGCTGGAGGTGAGAATGATGCAGATGCTGATGACGAAGACAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCAGGAAGCGAGTCTGCTGGTGATGAATGCTTCCAGGGAGATCACGAGGAGGAAGATATAGAACATGATGATGTTGATGGTAAGGCTGAGAGCGAAGGTGAAGCTGAGGGGATGTGTGACACACAAACTGGAGGAGATGGCTCACCTTTACCGTTATCAGAGAGGTTCCTTTCGACTGTGAAACCTCTCACAAAGCATGTATCAGCAGTTTCATTCGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTATGCGCTTTTTAGGCTTCATCAAATTCTTTATGAAAGGATCTTATCTGCAAAAGAAAATTCAACGAGCGCTGAAGTGAAATGGAAAGCAAAAGATGCTAGTTCCACAGATCCATATACAAGGTTTATGGATGCATTATATAATTTGCTCGATGGATCTGCTGAAAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTTGGGAACCAGTCTTATGTGTTATTCACATTGGACAagttaatatataaattaatcagACAGCTTCAAACCGTTGCAACTGATGAGGAAGACAATAAGCTTCTTCAATTATACGAGTACGAAAAGTCTCGGAAACCTGGGAAATTAAATGATTCAGTATATCATTCAAATGCACATGTCATCCTTCATGAGGAGAACGTATATCGTTTTCAATCTTCCTCTAGCCCTTCTCGACTCTCCATTCAGCTCATGGACAATATGAACGAAAAACCCGAGTTTTCTGCTGTTTCTGTTGatccaaatttttctttttatctgcACAATGATTTTCTTTCGGTCCTTCCTGCCAAAAAGGAACCTCATGGCATTTTACTGGAAAGAAACAAACCCAAATATGGCGACTTAGATGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAATTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTTGACACACAAGATTTTTTCTTCCGTCCAAGAAAAAAAAGACGagcatcttcatcatcatcaagtaCATCATCTTCTCGGTCTCGCAAGGAAAGAGAGGAAAGATACCGCAAATTGATGGCGTCCTCCGCATAA 3105 0.3958 MYSQAFSFCEKVKEKLSSAEDYQAFLKCLHIFSNGIIRRNDLQNLVTDLLGKHPDLMSEFNDFLERCENIDGFLAGVMSKKPLATDGHSSRSTKLEDKEHKRDMDGAKEKERYKEKYMGKSIQELDLSDCKRCTPSYRLLPADYPIPTASQRSDLGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRAEELYNSIIENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWTRCRSDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVTEIKEIKEKQQKEDDIVQSIAAGAKHPLIPHLEFDFSDAEIHEDLYKLVRYSCEEVFSSKELFNKIMRLWSTFLEPMLGVTSQSHGTERIEDRKVGQNARSSVAPNVEGDGSPHRDSISRLPKSEKNEVDGRVTEVKNGHQTSVAANGKENGSVGRDDLLMDNKGQKSVESSDKAPGFGKQFSSDEQAARNSASVTIRGESSVNRTNLDMSPGRVLTPSRPTDADVSVTIAKSPCSNVPLVEGCDVAAPVPPVANGMLVESSKVKSHEESSVPCKVEKEEGELSPNADSEEDNFVAYEDSNVQSKHDVDSSKYESKNGEAGGENDADADDEDSENVSEAGEDVSGSESAGDECFQGDHEEEDIEHDDVDGKAESEGEAEGMCDTQTGGDGSPLPLSERFLSTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFYALFRLHQILYERILSAKENSTSAEVKWKAKDASSTDPYTRFMDALYNLLDGSAENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHEENVYRFQSSSSPSRLSIQLMDNMNEKPEFSAVSVDPNFSFYLHNDFLSVLPAKKEPHGILLERNKPKYGDLDELSAICAVMEDVKVINGLECKISCNSSKISYVLDTQDFFFRPRKKRRASSSSSSTSSSRSRKEREERYRKLMASSA 1034
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 627 648 - -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 587 608 - -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 1016 1034 - -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 586 717 - -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 1001 1034 - -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 84 108 - -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 649 663 - -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 90 108 - -
Tsu06g01997 1034 PANTHER PAIRED AMPHIPATHIC HELIX SIN3-LIKE PROTEIN-RELATED 1 1016 - -
Tsu06g01997 1034 SUPERFAMILY PAH2 domain 2 67 IPR036600 GO:0006355
Tsu06g01997 1034 Pfam Paired amphipathic helix repeat 20 64 IPR003822 GO:0006355
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 438 460 - -
Tsu06g01997 1034 Gene3D Paired amphipathic helix 1 69 IPR036600 GO:0006355
Tsu06g01997 1034 SMART hdac_interact2seq4b 129 229 IPR013194 -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 480 494 - -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 679 693 - -
Tsu06g01997 1034 Pfam C-terminal domain of Sin3a protein 750 997 IPR031693 -
Tsu06g01997 1034 MobiDBLite consensus disorder prediction 407 519 - -
Tsu06g01997 1034 ProSiteProfiles PAH domain profile. 1 67 IPR003822 GO:0006355
Tsu06g01997 1034 Pfam Sin3 family co-repressor 131 222 IPR013194 -
Tsu06g01997 1034 PANTHER SIN3B-RELATED 1 1016 IPR039774 GO:0003714
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01997 Tsu-Chr6 24614047 24620974 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu06g01997 Sin3a_C 1.7e-55 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01997 K11644 - gmx:100812405 1659.43