Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01982 ATGGGTGCACCAACCATGATAAAGCCTAAGGAGACGAAAATGCGAATCATAAAGCGTGAATCAAATGACACTCCTTATCCCATCATTGCATTGCTAGTAGATGGTGTGACTGCAAACCGGCGTTTGGAGCATCATATGCTTGAATCAATAGGCATTCGAACAGAGCCTGCAAATGGTACTGCAGAAGCTATTGAAATTTTGTCGACTGGTGTCAACTTTGACTTCatatttgttgattttgatttgccGATTACTAGTGGACCTGAGtTGATGAGTCAGATGCGTGCAATGGGGGTACGAGGCAAGATGGTGGGAATGTTAGAAAATTTCAATAATCATAATCTGCAAATGTTTCATCAAGCAAGAGCTGATGCTTGCATTACCAAACCTTTTACCCAAGACAGGTTACAAGAAGTCATTGGAATCCTGCGACGCATGTTTGGAATGTAA 450 0.4022 MGAPTMIKPKETKMRIIKRESNDTPYPIIALLVDGVTANRRLEHHMLESIGIRTEPANGTAEAIEILSTGVNFDFIFVDFDLPITSGPELMSQMRAMGVRGKMVGMLENFNNHNLQMFHQARADACITKPFTQDRLQEVIGILRRMFGM 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01982 149 PANTHER HISTIDINE KINASE RESPONSE REGULATOR AND TRANSCRIPTION FACTOR RR-A-TYPE FAMILY-RELATED 6 145 - -
Tsu06g01982 149 Gene3D - 16 145 - -
Tsu06g01982 149 Pfam Response regulator receiver domain 31 140 IPR001789 GO:0000160
Tsu06g01982 149 PANTHER TWO-COMPONENT RESPONSE REGULATOR 6 145 - -
Tsu06g01982 149 SMART REC_2 28 140 IPR001789 GO:0000160
Tsu06g01982 149 ProSiteProfiles Response regulatory domain profile. 29 144 IPR001789 GO:0000160
Tsu06g01982 149 SUPERFAMILY CheY-like 30 141 IPR011006 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01982 Tsu-Chr6 24549157 24550516 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01982 28 136 Response Regulator Gene Family AT3G04280 27.928 5.07e-08 47.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Tsu06g01982 Response_reg 1.8e-11 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01982 - K03413 cam:101509883 130.568