Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01978 ATGGGTGTTTGTGATCAGAAAAATGATTCCAttgctaagaagaagaaaatgaaaaatggttcttttaaatcaattttcatGCATGCTGATGTTGTAGATTGGTTTTTCATggtttttggtttgtttgggGCTATTGGTGATGGCATAATGATCCCTTTGGTGTTGTTTATCACAAGCAGTGTTATAAACTCAATTGGGGGATTTTCTGGTCCAACCAGCAGCAATTTTGTCCATGCAATCAATAAGAATGCagtttttttgttatatgtGGCTTGTGCCTCCTCTGTTGCTTGCTTCCTAGAGGGTTATTGTTGGACAAGAACATCTGAAAGACAAGCTGCAAGAATGAGAGCTAGGTATTTAAAAGCAGTTCTAAGACAAGAAGTAGCATACTTTGATTTGCATGTTACAAGCACATCAGAAGTCATCACTAGTGTCACTAGTGACAGTCTAGTGATCCAAGATGTTCTTAGTGACAAGGTTCCAAATTTTTTGATGAATGCATCAATGTTCATTGGGAGCTACATAGTGGCATTAGCATTGTTATGGAGATTAGCAATAGTTGGAATCCCTTTTGTGGTTCTACTTGTGGTTCCTGGTTACATGTATAAGAAGACATTGATGAGATTATCTAGAAAGATTAGAGAAGAATACAATCAAGCTGGTACAATAGCAGAACAAGCAATATCTTCAATAAGAACTGTTTATTCCTTTGTAGGAGAAAGCAAAACCATAGCTTCTTTTTCTAATGCTTTAGAAGGATCAGTGAAGTTGGGATTGAAACAAGGATTAGCTAAAGGCTTAGCCTTAGGAAGCAATGGTGTTGTTTATGCTATGTGGTCTTTAATATGCTATTATGGAAGCACAATGGTCATGTATCATGGTGCTAAAGGTGGTAATGTATTTGCAGTTGGAGCATTATTAGCACTTGGTGGATTGGCATTAGGTGCTGGTTTATCAAATGTGAAATACTTTTCGGAAGCAAGTGTAGCAGGAGAAAGAATAATGGAAGTGATAAAAAGAGTTCCGAAGATAGATTCAGAAAACATGGAAGGTGAAATTCTAGAGAATGTATTAGGAGAAGTTGAGTTCAACCATGTTGAATTTGTGTATCCATCAAGACCAGAAAGTGTAATCTTAAATGATTTTAGCTTAAAAGTTCCATCAGGAAAAACAGTAGCATTAGTAGGAGGAAGTGGTTCAGGAAAATCAACAGTTGTATCACTTTTGCAAAGATTTTATGATCCAATTGGTGGAGAAATTCTTGTTGATGGAGTTGCTATTCATAAGTTGCAACTTAAATGGCTTAGATCTCAAATGGGATTAGTGAGTCAAGAACCTGCTTTGTTTGCAACAAGTATTAAAGAGAATATACTTTTTGGTAGAGAGGATGCTACATTTGAAGAAATTGTTGATGCTGCTAAAGCTTCTAATGCtcataatttcatttcattgttGCCACAAGGATATGATACTCAGGTTGGGGAGAGGGGAATTCAAATGTCAGGGGGACAAAAGCAAAGGATTGCAATTGCAAGAGCCATAATTAAAAAGCCAAAGATTCTATTGTTAGATGAAGCAACTAGTGCACTTGACTCTGAATCCGAACGAGTTGTCCAAGAAGCTTTAGACAAAGCCGCAGTTGGACgcaccaccatcatcatcgcTCATCGCTTATCCACCATCCAAAATGCAGACATCATTGCAGTCGTTCAAAATGGTAAGATCATGGAATCAGGATCTCACGAAATCCTAATGCAAAATGACAATTCTCTTTACGCATCCCTTGTTCAtctccaaaaaaacaaaaatgaccAAAATGACAACACTCTATCTATATTGAGTAGAGATCACATGCAAAACACGAGTAGTGGTAGACTCGTGGATCGTTCTAGCTCTTTCAACTCAATGACACACGGTGGTAGTTGTAGTAgtggtgatgatgataatgttcGTTATAACAATGTTGTTGAAGATGTTGTTAATAATGATAATGTTGTTGtagttgataaaaataatagtcGTAGTATTAGTAATAATagcaagaagaagaaggtagaggTTCCTTCGTTTCGAAGGTTGATGAAAATGAATGTGCCAGAGTGGAAGCAAGCGTGTTTAGGGTGTTTGAATGCGGTTTTATTTGGTGCGGTTCAACCTATAGCCACATTTGTGATAGGGTCAGTTGCTCAAGTTTATTTTCTGAATGACCATGATGAGATTAAGAAGCAAATTAGGATATATGCATTTTCTTTTCTAGGGTTAGCTATGTCCTCAATGGTTTTTAATGTTCTTCAACATTATAGCTTTGCTTACATGGGAGAGTATTTGACTAAGAGGGTTAGAGAAAGAATGTTTTACAAAATGCTCACTTTTGAAGTTGGTTGGTTTGATGAGGATCAAAATTCTACAGGTGCTATTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCTGTGGTGGGTGATAGATTGTCACTAATGATACAAACTATATCAGCAGTGGTAACAACATTCACAATGGGTCTAATCATTGCATGGAGATTATCCATTGTTATGATAGCAGTTCAACCAATTAACATATTTTGTTTCTACACAAAAACTGTCCTTCTTAATAACTTGTCAAGTAAAGCAATTAAAGCTCAAGATGATAGTAGCAAAATAGCTGCAGAAGCTGTTTCAAATCTAAGAACTATCACATCTTTTTCATCACAAAATAGAATCCTCAAAATGCTTGAAAAAGCCCAACAAGGCCCAAGTCATGAAAACATTAGACAATCTTGGTTTGCTGGTATTGGGCTTGCTTGTTTCCAAAGCATCAATATTTGTACTAGGGCCTTAAACTTTTGGTATGGTGGACAACTTGTGTCACATGGTTATATaactaaaaaacaattatttgagACTATAATGATTTTTGTTAGCACTGGAAAAGTTATTGCTGAAGTTGCTGGTAGCATGACTAATGATCTTGCTAAAGGTTCTGATGCCGTTGGATCGGTTTTCGCAATCCTTGATAGGTCTACGAAAATTGAGCCCGATGATTTAGAAGGTTACAAGGTTGACAGTTTAATAGGAAAAGTTGAACTTCATGATGTACATTTTGCGTATCCGGCTAGACCTAATGTGATGATCTTTCGAGGGTTCTCGATTAAAATTGACGCTGGAAAATCCACGGCTTTGGTCGGGGAAAGTGGTTCTGGAAAATCGACAATCATAGGACTAATTGAGAGATTCTATGATCCTTTTAAAGGGATAGTGACAATTGATGGTAGAGACATAAAGTCTTATAATCTAAGGTCATTAAGGAAACACATTGCACTTGTGAGTCAAGAACCAACATTGTTTGGTGGTACCATAAGGGAAAATATTGCATATGGAGCTTCTGATGATAAGGTTGATGAAAGTGAGATTATTGAGGCATCAAAAGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAAACATTGTGTGGTGAAAGAGGAGATCAACTAAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCTAAGGTGTTGCTTTTGGATGAAGCAACAAGTGCACTTGATAGTCAATCAGAGAAATTAGTGCAAGATGCTCTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTGGCTCATAGGTTGAGTACTATAGAAAATTGTGATTTGATTGCTGTTTTGGATAAAGGAAGTGTTGTTGAGATAGGAACACATTCATCTTTGTTGGCTAAGGGACCAAGTGGAGCTTATTACTCTTTGGTAAGTTTACAAAGAAGACCAACCAACACAAATGTTGATTCTTCACATGAAATCAATTAA 3858 0.3494 MGVCDQKNDSIAKKKKMKNGSFKSIFMHADVVDWFFMVFGLFGAIGDGIMIPLVLFITSSVINSIGGFSGPTSSNFVHAINKNAVFLLYVACASSVACFLEGYCWTRTSERQAARMRARYLKAVLRQEVAYFDLHVTSTSEVITSVTSDSLVIQDVLSDKVPNFLMNASMFIGSYIVALALLWRLAIVGIPFVVLLVVPGYMYKKTLMRLSRKIREEYNQAGTIAEQAISSIRTVYSFVGESKTIASFSNALEGSVKLGLKQGLAKGLALGSNGVVYAMWSLICYYGSTMVMYHGAKGGNVFAVGALLALGGLALGAGLSNVKYFSEASVAGERIMEVIKRVPKIDSENMEGEILENVLGEVEFNHVEFVYPSRPESVILNDFSLKVPSGKTVALVGGSGSGKSTVVSLLQRFYDPIGGEILVDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATFEEIVDAAKASNAHNFISLLPQGYDTQVGERGIQMSGGQKQRIAIARAIIKKPKILLLDEATSALDSESERVVQEALDKAAVGRTTIIIAHRLSTIQNADIIAVVQNGKIMESGSHEILMQNDNSLYASLVHLQKNKNDQNDNTLSILSRDHMQNTSSGRLVDRSSSFNSMTHGGSCSSGDDDNVRYNNVVEDVVNNDNVVVVDKNNSRSISNNSKKKKVEVPSFRRLMKMNVPEWKQACLGCLNAVLFGAVQPIATFVIGSVAQVYFLNDHDEIKKQIRIYAFSFLGLAMSSMVFNVLQHYSFAYMGEYLTKRVRERMFYKMLTFEVGWFDEDQNSTGAICSRLAKEANVVRSVVGDRLSLMIQTISAVVTTFTMGLIIAWRLSIVMIAVQPINIFCFYTKTVLLNNLSSKAIKAQDDSSKIAAEAVSNLRTITSFSSQNRILKMLEKAQQGPSHENIRQSWFAGIGLACFQSINICTRALNFWYGGQLVSHGYITKKQLFETIMIFVSTGKVIAEVAGSMTNDLAKGSDAVGSVFAILDRSTKIEPDDLEGYKVDSLIGKVELHDVHFAYPARPNVMIFRGFSIKIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGIVTIDGRDIKSYNLRSLRKHIALVSQEPTLFGGTIRENIAYGASDDKVDESEIIEASKAANAHDFISSLKDGYETLCGERGDQLSGGQKQRIAIARAILKNPKVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIENCDLIAVLDKGSVVEIGTHSSLLAKGPSGAYYSLVSLQRRPTNTNVDSSHEIN 1285
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01978 1285 PANTHER ATP-BINDING CASSETTE SUB-FAMILY B 22 1275 IPR039421 -
Tsu06g01978 1285 CDD ABC_MTABC3_MDL1_MDL2 1029 1270 - -
Tsu06g01978 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1023 1270 IPR027417 -
Tsu06g01978 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Tsu06g01978 1285 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524
Tsu06g01978 1285 Pfam ABC transporter 1049 1198 IPR003439 GO:0005524
Tsu06g01978 1285 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Tsu06g01978 1285 Gene3D - 352 601 IPR027417 -
Tsu06g01978 1285 SUPERFAMILY ABC transporter transmembrane region 687 1013 IPR036640 GO:0005524|GO:0016021
Tsu06g01978 1285 Pfam ABC transporter transmembrane region 38 308 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01978 1285 Pfam ABC transporter transmembrane region 707 974 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01978 1285 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Tsu06g01978 1285 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Tsu06g01978 1285 SUPERFAMILY ABC transporter transmembrane region 33 346 IPR036640 GO:0005524|GO:0016021
Tsu06g01978 1285 CDD ABC_6TM_Pgp_ABCB1_D2_like 695 1012 - -
Tsu06g01978 1285 PANTHER ABC TRANSPORTER B FAMILY PROTEIN 22 1275 - -
Tsu06g01978 1285 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Tsu06g01978 1285 SMART AAA_5 1056 1250 IPR003593 -
Tsu06g01978 1285 SMART AAA_5 389 581 IPR003593 -
Tsu06g01978 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01978 1285 Gene3D ABC transporter type 1, transmembrane domain 673 1017 IPR036640 GO:0005524|GO:0016021
Tsu06g01978 1285 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1029 1267 IPR003439 GO:0005524
Tsu06g01978 1285 Gene3D - 1019 1280 IPR027417 -
Tsu06g01978 1285 ProSitePatterns ABC transporters family signature. 1170 1184 IPR017871 GO:0005524
Tsu06g01978 1285 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 712 963 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Tsu06g01978 1285 Gene3D ABC transporter type 1, transmembrane domain 25 616 IPR036640 GO:0005524|GO:0016021
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01978 Tsu-Chr6 24514232 24524316 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01978 736 1283 Calmodulin-binding Proteins AT2G36910 39.051 2.62e-114 386
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01978 K05658 - gmx:100807709 1854.72