Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01976 ATGGCTCTGCAATCACCTTCCTCTTCATTTCCCaatgaatatttcaattatcaGGTCTTTATCAGTTTTAGGGGTAGCGACACTCGGTATGTTTTCGCTAATAATCTCTACAATGCTCTTAAAGACAAGGGAATCCACACCTTTATAGATCACGATGGTCTTCAGAGAGGGGATGAAATAACACCAACACTCATCAAAACCATCAATGAGTCTAGAAtctatattcctatattttcaatcaactatgcttcttcttcattttgtttGGATGAACTTGTCCACATCATGCGTCGCTCCAAAGAAAATGGTCGCCTTGTTCATCCTGTTTTCTACGGTGTGGATCCTTCTGACGTGCGGCATCAGAAAGGTAGTTACGGTGAAGCACTTGCCGATCACGAAAAGAAGTTCCAAAATAATGAGAAAAACATGGAGCGGTTGTATCAATGGAAGATAGCTCTTAAAGAAGCTGCTAATATTGCCGGCTACCATTTCAAAATTGGATCAGACATGAATGAATATGAACACACGTTTATTGGAGATATTGTTCAAGCTGTCTCCAATAAGACCAAGCGAGCTCCTTTACATGTTGTTGATTATCCTGTTGGACTCGAGTCTCGAGTACGTAAAGTGAACTCACTTCTGAATGAGGCTTGTAATGATGGAGTTTGCATGATTGGGATTCATGGGGCGGGAGGAATAGGTAAATCAACACTTGCTCGAGCTGTTTATAATTTAATTGCTGATCAATTTGAGTGTTTGTGTTTCCTTCACAATGTGAGAgaaaattcattaaatgatgGTTTGGAACATCTCCAAGAGCAGCTCCTTTACAAAACAATTAGATTGGAAATGAAGATAGGAGGTGTCAATGAAGGAATTCAAATCATTAAAGAAAGGCTAAGTCAGAAGAAGGTCTTGTTGATTCTTGATGACGTTGACGAGTTGAAGCAGCTAAGATTTTTGGCCGGAGGACTTGATTGGTTTGGTCGTAACAGCAGAGTCATCATTACCACTCGAGACAAAAGTTTGTTAAAATGTCATGGGATTGAAAGATTATATGAAGTAGATGGCTTAAACAAGGGTGAATCTCTTGAATTGTTTAAGCGGATGGCTTGTAAAACTAAGAAAGTTGAATCAATTAATGATGATATTGTCAACCGTGCAATTATTTATGCTTCTGGCCTTCCATTAGCTATAGATGTCATAGGTTCCAATTTGTCAGGGAAGCATGTTGACGAATGGAAGTCGATGTTAGATCGATATAAAAGGATTCCACCTAAAGATATCCAAAATATACTAAAAGTAAGCTTTGATGATTTGGATGAAGAACTGAAAAACATCTTTTTAGATATTGCTTGTTTCTTTCAAGGGTCTAAGTTGAAATTGGTCGAAGATATACTTAGTGTACATTATGGTTATGACATAAAAGATCATGTTCGAGTGTTGGTTGATAAATCTCTCACAAAGATTGATGGTCGTTTTGTGAGATTACATGACTTGATAGAGGACATGGGTCGAGACATTGTTCGAAAAGAATCACCCGATCATCCTGAAAATCGCACTAGATTGTGGTTACTCAAAGATATAGTTGAAGTTTTAGAACAAAACAAGGGAACAAGTGAAACTAAAATGATATATCTTAATTATTACTGCTCAAAGGAAGTCGCAATAAATTGCAGTGGAGAATGCTTCAAGAAGATGACAAATCTAAAAACACTTGCCATTAAAAGTTGCGGTATACATTTTTTCGATGGGTTCCCATATTTTCCAAGTAGTTTGAGATTACTTGAATTGTGGTATAGGTATCCATATCCTTCTACACCATTTAGTACTATGAACAAGGCAAGTgaataa 1854 0.3598 MALQSPSSSFPNEYFNYQVFISFRGSDTRYVFANNLYNALKDKGIHTFIDHDGLQRGDEITPTLIKTINESRIYIPIFSINYASSSFCLDELVHIMRRSKENGRLVHPVFYGVDPSDVRHQKGSYGEALADHEKKFQNNEKNMERLYQWKIALKEAANIAGYHFKIGSDMNEYEHTFIGDIVQAVSNKTKRAPLHVVDYPVGLESRVRKVNSLLNEACNDGVCMIGIHGAGGIGKSTLARAVYNLIADQFECLCFLHNVRENSLNDGLEHLQEQLLYKTIRLEMKIGGVNEGIQIIKERLSQKKVLLILDDVDELKQLRFLAGGLDWFGRNSRVIITTRDKSLLKCHGIERLYEVDGLNKGESLELFKRMACKTKKVESINDDIVNRAIIYASGLPLAIDVIGSNLSGKHVDEWKSMLDRYKRIPPKDIQNILKVSFDDLDEELKNIFLDIACFFQGSKLKLVEDILSVHYGYDIKDHVRVLVDKSLTKIDGRFVRLHDLIEDMGRDIVRKESPDHPENRTRLWLLKDIVEVLEQNKGTSETKMIYLNYYCSKEVAINCSGECFKKMTNLKTLAIKSCGIHFFDGFPYFPSSLRLLELWYRYPYPSTPFSTMNKASE 617
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01976 617 PANTHER ARCHAEAL ATPASE 29 601 - -
Tsu06g01976 617 Gene3D - 357 441 IPR042197 -
Tsu06g01976 617 SUPERFAMILY Toll/Interleukin receptor TIR domain 7 162 IPR035897 -
Tsu06g01976 617 Gene3D - 11 186 IPR035897 -
Tsu06g01976 617 ProSiteProfiles TIR domain profile. 15 189 IPR000157 GO:0007165
Tsu06g01976 617 Pfam NB-ARC domain 204 444 IPR002182 GO:0043531
Tsu06g01976 617 Pfam TIR domain 16 192 IPR000157 GO:0007165
Tsu06g01976 617 SMART till_3 16 159 IPR000157 GO:0007165
Tsu06g01976 617 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 29 601 IPR044974 GO:0006952
Tsu06g01976 617 PRINTS Disease resistance protein signature 392 406 - -
Tsu06g01976 617 PRINTS Disease resistance protein signature 299 313 - -
Tsu06g01976 617 PRINTS Disease resistance protein signature 224 239 - -
Tsu06g01976 617 PRINTS Disease resistance protein signature 565 581 - -
Tsu06g01976 617 Gene3D - 187 350 IPR027417 -
Tsu06g01976 617 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 451 IPR027417 -
Tsu06g01976 617 SUPERFAMILY "Winged helix" DNA-binding domain 428 534 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01976 Tsu-Chr6 24442967 24449540 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01976 201 608 WRKY Transcription Factor Family AT5G45050 32.719 2.29e-56 204
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01976 - - mtr:MTR_6g071935 691.419