Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01958 ATGGCATCAGGTGGAACAGAAGCTTTTCCAGATTTAGGCAAACACTGCCAACATCTTGATTGTCACCAGCTTGATTTCCTTCCTTTCACATGTGATGGCTGCAAAcagGTATTCTGTGTAGAACATAGATCCTACAAGTCTCATGAATGTCAGAAACAAGACCACAACAGTAGAAAAGTGGTTGTCTGTGAAGAATGTTCCATGTCGATGGAGATCACAAACAACACCGGAGAAAACGAAGAAACGATCTTAAAAAAGCATCACACATCACGGAAGTGTGACCCtagcaagaagaagaaaccaaCTTGCCCGGTGAAGCGTTGCAAAGAGATTTTGACGTTTTCTAACACGAGTACTTGTAAAACTTGCCACATTAAGGTGTGTCTCAAACACCGATTTGCAGCCGATCATGCTTGTAGTAAAGGAGTTTCATCTTCCTCCTTAACAAATGCTGCTGGTAATGGAAGATGGAATAATAGGTTTATGGCTGCTTTGGCTTCAAGGAATAATAATCAAGATTGTGCCAAAAAAGCTGGAACTCGTTCTACTAATTCTCCTCCTAGTACTCCTTCTGTTAAGGCTTATTGA 588 0.3963 MASGGTEAFPDLGKHCQHLDCHQLDFLPFTCDGCKQVFCVEHRSYKSHECQKQDHNSRKVVVCEECSMSMEITNNTGENEETILKKHHTSRKCDPSKKKKPTCPVKRCKEILTFSNTSTCKTCHIKVCLKHRFAADHACSKGVSSSSLTNAAGNGRWNNRFMAALASRNNNQDCAKKAGTRSTNSPPSTPSVKAY 195
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01958 195 SMART AN1_Zf_4 16 55 IPR000058 GO:0008270
Tsu06g01958 195 SMART AN1_Zf_4 103 144 IPR000058 GO:0008270
Tsu06g01958 195 Gene3D - 77 155 IPR035896 -
Tsu06g01958 195 ProSiteProfiles Zinc finger AN1-type profile. 10 58 IPR000058 GO:0008270
Tsu06g01958 195 PANTHER ARSENITE INDUCUBLE RNA ASSOCIATED PROTEIN AIP-1-RELATED 6 183 - -
Tsu06g01958 195 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 6 183 - -
Tsu06g01958 195 SUPERFAMILY AN1-like Zinc finger 6 58 IPR035896 -
Tsu06g01958 195 ProSiteProfiles Zinc finger AN1-type profile. 97 147 IPR000058 GO:0008270
Tsu06g01958 195 Gene3D - 2 69 IPR035896 -
Tsu06g01958 195 Pfam AN1-like Zinc finger 103 141 IPR000058 GO:0008270
Tsu06g01958 195 Pfam AN1-like Zinc finger 16 53 IPR000058 GO:0008270
Tsu06g01958 195 MobiDBLite consensus disorder prediction 172 195 - -
Tsu06g01958 195 SUPERFAMILY AN1-like Zinc finger 91 143 IPR035896 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01958 Tsu-Chr6 24162997 24164133 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01958 1 169 C2H2 Transcription Factor Family AT3G28210 62.130 1.53e-74 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01958 - - aprc:113867149 313.153
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01958 06 24162997 24164133 Tsu06g01958 06 24162997 24164133 ECH