Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01957 ATGGAGAttaacaaaaacacaaataacaaaTGGAGAAgtccaaaaaaacaaacatcatTAGAACCAATCACAACACCAAAGATGaaatggaagaagatgatgattttCTTCAATACAACAAAAACTACACAAAATCCACCTCAAGAATTTCTCTGTCCCATTTCTGGTTCTCTCATGTCTGACCCTGTAATTGTCTCATCAGGCCATTCCTTTGACAGAATCTCCATTGAAGCTTGTAAAAATCTCAACTTTACCCCTCAACTTCAAGATGGCACCATCCCCAATTTCACAACCCTAATTCCCAATCTTAACCTCAAATCCTCAATTCTCAAATGGACCCAATCATCACAaaccaaaattcaaacaaacccAAATCTCAAAAACACTGAAAACCTCGTACGAACATTAATTTCCTCAAAAAAACATGAACACCATCAAATCGATGTCGTTTCAGAGAAAAACGACCAAGAAGAAGAAACACGACAAATCTCAATCTTAACACCACAAAAAACCTCGTACTCGAGCTCAGAGGAATCCATAGCTACTGCCACGtcatcatcttcaacaacaCCACGACCGCAATTTCAAAGTTTCTGTTActcttcaccttcttcatctGAACTTGAACCTTCAACATCaccagaagaagaagaaatcgtAACAAAACTCAGAAACCCACAACAGTTCATAATCGAAGAAGCTTTAATCTCACTCAGGAAAATGACAAGAACGAAAGAGGAAACAAGGGTTCAACTTTGCACCAATAGGGTACTATGTTCTTTGCGTAcgttaattttgtcaaaaaacgAGGTTATAAGAGTCAACGCTCTTGCTTCATTAGTCAACCTTTCTCTTGAGAAAGTTAACAAAGTGAAGATCGTACGGTCAGGAATTGTTCCACCGTTGATTGAGGTTTTGAAGTTTGGATCGTGTGAATCGCAGGAACACGCTTCTTGTGTGTTCTTTAGTTTAGCacttgatgatgataataaaacTGCGATTGGTGTTTTAGGTGCTCTTTTACCGTTGCTTCACGCACTTAAATCGGAGAGTGAGAGAACGCGCCATGATTCGAGTTTAGCACTTTCTCATTTGTCTTTAGTGAGGAGTAATAGGGCTAAGATGGTTAAGCTTGGATTTGTTAGTGTTCTTTTGGGTATGGTTAAGTCGGGTCATATGATGGATCAAGTTTTGTTGATTTTGGGTAATTTGGCATATGGGTCGGATGGTCGGGCTGCTATGTTAGATGCGGGTGTTGTGGAGTGCTTGGTCGGTTTATTGGGTGGGACCGAGTTGGATTCTGAGTTGACTCGGGAGAGTTGTGTTGGGGTTTTGTATGCATTGAGTCACGGCGGGTTGAGGTTTAAGGCGGTGGCGAAGGAGGTTGGAGTTGTCGAAATGTTGGAAAAGATGGAGAAAATGAAGAGTGAGAAGGCTAACGAGAAGGTGAGGAGGATATTGGAGATGATGAGTGAGAAAGAGGCGGAAGAGGAGGAGGTTGATTGGGAGGAATTGCTTGACTCAGGGTTTAGTTGTCAAACTATGAGTCGACAAAACAGTGGGTTGGACGAGTCAAGTGTTAACTGA 1587 0.373 MEINKNTNNKWRSPKKQTSLEPITTPKMKWKKMMIFFNTTKTTQNPPQEFLCPISGSLMSDPVIVSSGHSFDRISIEACKNLNFTPQLQDGTIPNFTTLIPNLNLKSSILKWTQSSQTKIQTNPNLKNTENLVRTLISSKKHEHHQIDVVSEKNDQEEETRQISILTPQKTSYSSSEESIATATSSSSTTPRPQFQSFCYSSPSSSELEPSTSPEEEEIVTKLRNPQQFIIEEALISLRKMTRTKEETRVQLCTNRVLCSLRTLILSKNEVIRVNALASLVNLSLEKVNKVKIVRSGIVPPLIEVLKFGSCESQEHASCVFFSLALDDDNKTAIGVLGALLPLLHALKSESERTRHDSSLALSHLSLVRSNRAKMVKLGFVSVLLGMVKSGHMMDQVLLILGNLAYGSDGRAAMLDAGVVECLVGLLGGTELDSELTRESCVGVLYALSHGGLRFKAVAKEVGVVEMLEKMEKMKSEKANEKVRRILEMMSEKEAEEEEVDWEELLDSGFSCQTMSRQNSGLDESSVN 528
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01957 528 Coils Coil 464 499 - -
Tsu06g01957 528 Gene3D - 212 489 IPR011989 -
Tsu06g01957 528 MobiDBLite consensus disorder prediction 161 210 - -
Tsu06g01957 528 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 28 132 IPR013083 -
Tsu06g01957 528 PANTHER U BOX DOMAIN-CONTAINING 39 519 - -
Tsu06g01957 528 SMART Ubox_2 49 112 IPR003613 GO:0004842|GO:0016567
Tsu06g01957 528 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 38 39 519 - -
Tsu06g01957 528 MobiDBLite consensus disorder prediction 143 216 - -
Tsu06g01957 528 MobiDBLite consensus disorder prediction 1 24 - -
Tsu06g01957 528 SMART arm_5 286 326 IPR000225 GO:0005515
Tsu06g01957 528 SMART arm_5 327 367 IPR000225 GO:0005515
Tsu06g01957 528 SMART arm_5 407 450 IPR000225 GO:0005515
Tsu06g01957 528 MobiDBLite consensus disorder prediction 143 160 - -
Tsu06g01957 528 SUPERFAMILY RING/U-box 41 116 - -
Tsu06g01957 528 ProSiteProfiles U-box domain profile. 45 119 IPR003613 GO:0004842|GO:0016567
Tsu06g01957 528 Pfam U-box domain 47 116 IPR003613 GO:0004842|GO:0016567
Tsu06g01957 528 SUPERFAMILY ARM repeat 219 491 IPR016024 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01957 Tsu-Chr6 24134077 24136229 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01957 47 528 U-box Gene Family AT5G40140 49.495 1.10e-142 420
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01957 - - lja:Lj2g3v1020040.1 560.066
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01957 06 24134077 24136229 Tsu06g01957 06 24134077 24136229 ECH
Tsu06g01957 06 24134077 24136229 Tsu04g00093 04 886727 891983 PCT