Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01932 ATGTATGTGAAGTTGACAAAAATTACTGAAATCACTGGTGGGAAGATTGATTTTCAATTGAGGGTTCGAGTGATTAACCTCTGGGCTACACCCGATCGTAATAATCCAACTGAAGATGGAGCTATTAACATGATTTTCCTTGACAAGGATTGTGGAAAGATCCATGCAGTTGTTAGAAAGGACTTGATCGCTCAGTTTAAGGAGGATATTAAGGAAGGTTGTGCTTATCTGATTGAGAGATTCATGGTTGCTAAGAATGACTCTTCTTTCAAAACCACTTCCCATAAACATAAGCTCAATTTCATGCGTGGAACCAAAGTCTTTAAAGTAACTGTTAATGAAATACTGCCAAATCATTTTAACTTCATGCCTTTCCAAGATATCCTTGCATGCACCAAAGAAGATCAGTATCTTGACGTTATTGGACATGTTGTTGAGAAGAATACTTTGAAGGAAACTGAGAAGAACGGACACATTCACAAGGTGATGGATGTCACTCTTGAAGACTTggaAGGGATTAGGATACATTGTACTCTTTGGGCTGACTTTGCTGTTAAAATGCAACAATTTATTGATGGCCATGACTCATCTCTACCTGTGATAATGGTCCTTCAATTAGGCAAACTTAAAAAGTACCTTGGTTCAATGGGAATTTCAAACTCTTTCTATGGGACAAAGTTGTTTCTGAATGCTGACATTCCTGAGGTCACTACCTACATAGAAAGAATGAATGCTGCCAATGTGGAACTAACTCAAGTGGTTAGTCAAATGAGTGGACCTGTGATCGTGACTGTTGCTGATGATTTACTCCAGACACCAAGGATGACTATAGAGGATTTAATTGAGTCCAGTCAGGCAAATATTCCTGGAACAACATCTTTTTTCGTTTACAATTATTTGGCCTGCACTAGATGTGCTTCAAGAATAACTTTCATCGCAGGTCAGCTCTACTGTGAGAAATGCAAGATGCCACGCACTGCAATTCCTAGTTTCAAAGTCCATCTTCAAGTTATAGATGATATTGGATCAATAACTTTTGTCATGTTTGATCGTGTTGTCTCCCAAGTTTTGGGTAGGACTGCCCAAGATCTTCTTGACACTATGAACAATGAAGGCAGTTCTCGCAGTTTCCCATCTGAACTTGACGTATTTGTGGACAAGCGAATGCTTTTCAAGGTTGAAGTGACTGATGCTAATTTATACCGTAACTGGCGTGGCTATACAGTCAAGAAGGTGACAGATGAGGAGGATGTAATCAACCGATTTGTTTCTCTCCATGGCTTAACTGTTGTCGTCAATAATGAGGAGCCTAGCTATGGCGACTTTGTCTGCAATTTGGGGGATGACACTCCATTGGTATCACTTGAGGGTGGTGATTCAAGCAACAATGAAGAAATCATTGTCCATGGTGCTTTTAACACTCCAACTAGCAAGTTGGCTTCCAAGAAATCAGCTGATCTTGAAATCATCGGTGCTTCTGCTACTAAAGAGACTCTAAAGCCATCTAGGGAGTTGGTTCTCCCCAAATCACCAGATAACAAGCCAGCTGGGAAAAGATCTGCCAATCCTGATGGATGTGATGATGCGGCTGTTAAGGAGACTAAGCTCGTGTGCGTGAAAATTGAGAGCTCCAACTAA 1638 0.4042 MYVKLTKITEITGGKIDFQLRVRVINLWATPDRNNPTEDGAINMIFLDKDCGKIHAVVRKDLIAQFKEDIKEGCAYLIERFMVAKNDSSFKTTSHKHKLNFMRGTKVFKVTVNEILPNHFNFMPFQDILACTKEDQYLDVIGHVVEKNTLKETEKNGHIHKVMDVTLEDLEGIRIHCTLWADFAVKMQQFIDGHDSSLPVIMVLQLGKLKKYLGSMGISNSFYGTKLFLNADIPEVTTYIERMNAANVELTQVVSQMSGPVIVTVADDLLQTPRMTIEDLIESSQANIPGTTSFFVYNYLACTRCASRITFIAGQLYCEKCKMPRTAIPSFKVHLQVIDDIGSITFVMFDRVVSQVLGRTAQDLLDTMNNEGSSRSFPSELDVFVDKRMLFKVEVTDANLYRNWRGYTVKKVTDEEDVINRFVSLHGLTVVVNNEEPSYGDFVCNLGDDTPLVSLEGGDSSNNEEIIVHGAFNTPTSKLASKKSADLEIIGASATKETLKPSRELVLPKSPDNKPAGKRSANPDGCDDAAVKETKLVCVKIESSN 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01932 545 MobiDBLite consensus disorder prediction 500 527 - -
Tsu06g01932 545 CDD RPA1_DBD_C 299 415 IPR013955 -
Tsu06g01932 545 SUPERFAMILY Nucleic acid-binding proteins 119 245 IPR012340 -
Tsu06g01932 545 SUPERFAMILY Nucleic acid-binding proteins 4 109 IPR012340 -
Tsu06g01932 545 Gene3D - 270 422 IPR012340 -
Tsu06g01932 545 Gene3D - 3 109 IPR012340 -
Tsu06g01932 545 Pfam Domain of unknown function DUF223 44 132 IPR003871 -
Tsu06g01932 545 Gene3D - 113 253 IPR012340 -
Tsu06g01932 545 PANTHER REPLICATION FACTOR A 1, RFA1 49 423 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Tsu06g01932 545 SUPERFAMILY Nucleic acid-binding proteins 273 414 IPR012340 -
Tsu06g01932 545 PANTHER BNAC07G49340D PROTEIN 49 423 - -
Tsu06g01932 545 CDD RPA1_DBD_A_like 20 107 - -
Tsu06g01932 545 CDD RPA1_DBD_B_like 139 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01932 Tsu-Chr6 23814600 23817191 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01932 18 396 Core DNA Replication Machinery Family AT5G08020 21.836 1.95e-14 74.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01932 - - mtr:MTR_1g105785 455.292