Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01918 ATGGATAGAAGGTTCTGTTACAAAGATTTTCTACCTTTTGTGGTTCTTGTTGGCAATGAATGTATCATAACAGGAGTAAACACTTTGTTCAAAGCAGCTACTTTGCAAGGAATGAGTAAATATGTCTTTGTTGCTTATTCTTATGCTTTTGCAACTATCTTCTTCTTTCCTGTCTATCTCTTCTATAGAAGATCAAGAGTGGTTCCTCAACTCAGTTTCTCCATCTTATCTAAAATCGCTCTTCTTGGATTCATAGGAGGTTCAGCTCAAATTCTAGGGTATTCTGGCATCAGTTACAGTTCTCCTACACTTTCCTCTACAATTGGAAATCTCATTCCTGCTTTCACCTTCATTTTAGCTGCCATTTGCAGGATGGAAAAAATAGCTATAAAAACTAGAACTACACAAGCTAAGGTTTTGGGAAGCATTATATCAATATCAGGTGCATTTATAGTGACTTTCTACAAAGGAAAATCAATTACCAATATTGTTCATAATTCTTCTTCCTTTCATCTTCAACACTCAAATGGCATTCTTACATCAGTTGATATAAATTCGGCCATTGGTGGCCTTTTGCTGATAGTATCCAATATACTAATTACCATATGGGTCATTGTTCAGGCGGAAATCATGAAGGAGATTCAAGATGAACTAACTTTGGTCTTCTTTCACAACTTATTTGCAGCCATTTTGGCTTTAAGTGTAGGTTTCTTAGCAGAGACGAATAGTAGTCTTTGGAATATAAGACTAGACATATCACTGGTCTCTATTGCCTGTACGGCAATATTTGGCAAGTTCGTGTGTAATGCAGTATATGCTTGGGCAATACACTTAAAGGGTCCTGTATATGTAACAATGTTCAAGCCACTCTCAATTGCTATTGCTGTTGTCATGGGTATGGTGTTCCTTGGTGATACTCTTCATATTGGAAGTATAGTTGGAGCTACAATAATCTCAATTGGTCTTTATGCTGTATTATGGGGCAAAGCATCAGAAGAGACAGAGGAAGATATTGTTGGTACCTTGGAGTCACCATCTACTGAGAATTCACCTTTGTTGCAAAATTATAGAACTGATCAaacttttgaaaagaaaatagataGAAATGTTTAA 1113 0.3585 MDRRFCYKDFLPFVVLVGNECIITGVNTLFKAATLQGMSKYVFVAYSYAFATIFFFPVYLFYRRSRVVPQLSFSILSKIALLGFIGGSAQILGYSGISYSSPTLSSTIGNLIPAFTFILAAICRMEKIAIKTRTTQAKVLGSIISISGAFIVTFYKGKSITNIVHNSSSFHLQHSNGILTSVDINSAIGGLLLIVSNILITIWVIVQAEIMKEIQDELTLVFFHNLFAAILALSVGFLAETNSSLWNIRLDISLVSIACTAIFGKFVCNAVYAWAIHLKGPVYVTMFKPLSIAIAVVMGMVFLGDTLHIGSIVGATIISIGLYAVLWGKASEETEEDIVGTLESPSTENSPLLQNYRTDQTFEKKIDRNV 370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01918 370 Pfam EamA-like transporter family 21 153 IPR000620 GO:0016020|GO:0016021
Tsu06g01918 370 Pfam EamA-like transporter family 188 326 IPR000620 GO:0016020|GO:0016021
Tsu06g01918 370 PANTHER WAT1-RELATED PROTEIN 8 356 IPR030184 GO:0016021|GO:0022857
Tsu06g01918 370 PANTHER WAT1-RELATED PROTEIN 8 356 - -
Tsu06g01918 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 250 330 - -
Tsu06g01918 370 SUPERFAMILY Multidrug resistance efflux transporter EmrE 48 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01918 Tsu-Chr6 23538752 23546309 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01918 4 345 Nodulin-like Gene Family AT5G40240 45.245 9.42e-106 313
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01918 - - gmx:100811686 490.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu06g01918 06 23538752 23546309 Tsu06g01918 06 23538752 23546309 ECH
Tsu05g01520 05 14696160 14699891 Tsu06g01918 06 23538752 23546309 ECH