Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu06g01917 atgacaagaaGATGGTCCTTTTACATGGATTTTCTACCAGTTGTGGTGATCATAGGCTTTGAATTTATTGACATGGGTTTACTGACTTTGTTCAAAGCAGCAACACTTCAAGGGATGAACAATCATGTCTTTATTGCCTATGCATATGTTGTTGGTACTTCTGTTCTTCTCCCTGTCACTCTTTTCACCAGAAGAGTGGTTCCTCCACTTAGTTTCTCCATACTATGGAAAAGTGTACTTCTTGGGGCAATAGGATGTGCATCTCAGATTCTAGGGTATATTGGTATAAATTACAGTTCTCCAACACTTGCTTCAGCAATTGCAAATCTTGTACCTGCTTTCACTTTCATGCTAGCTGTAACTTTCAGGATGGAAAAGTTAGTTGCGATGAGTAGAAGTAGTAATGCTAAGGTAATTGGAAGCATAGTATCAATAGCAGGTGCTTTTGTGTTGACTTTCTACAAAGGACCATCCATCATGAATTCTTCATCACTTCATCAACCAATTGAGTTTCTCAAATCAGTGAATTCAAGTTGGGCCATTGCAGGCATTATACTAACAGCTGACTACTTTCTGCTTTCACTATGGTATATTTTACAGGTACATATCTTGAAAGAGTTCCCAGATGAACTAACTTTAGTCTTGTTATACTCCATAACTGCAACCATCATATCTATAGTTGTAGCTTTGTTATCAGTTCCAGATGCAAGTGCTTGGAAAATAGGACTAAATCTCTCACTCATCTCCATTGTTTCTTCTggaATATTTGGAAAGTTAATAGGCAATATAATTTATGCTTGGTCAGTTCACTTAAAAGGGGCTGTCTATATAACCTCATTCATGCCATTCCAAATTGTTATTTCTGTTGGTTTGGGAGTTATATTTCTTGGTGATACTCTTCATATTGGAAGTATAATTGGAGCCACAATAATCTCAATTGGTCTTTATGGTGTATTATGGGGCAAAGCAACAGAAGAGATAGATGAAGATGTTGGTAGTTTGGAGTCACCATCTATAGAGAATGCACCTTTGTTGCAAAGTTATAGAACTGATCAAACCTTTGAAAAGAAAACAGATAGAAATACAACATATGTATATAACTTAGGACAAATACTTGATgaatttcttcatatttttcttttcatgtcTCTTTGTAGATCAAGAGTGGTTCCTCCACTAAGATTCACCATCATATGCAAAATTGTGCTTCTTGGCACAATAGGATGTGCATCTCAGATTCTGGGGTATATAAGTATTAATTTCAGTTCTCCAACACTTGCTTCAGCAATTGCTAATCTAGTACCTGCTTTCACCTTCATGCTAGCTGTTACTTTCAgGATGGAAAAGTTAGCAGCAAAGCGTAGAAGTAGTAATGCTAAGGTAATAGGAAGCATAGTATCAATAGCAGGTGCTTTTGTGTTGACTTTCTACAAAGGACCATCCATCATCAATTCTTCATCACTTCATCAACCAATTGGATTTCTCAAGTCAGTGGATTCAAGTTGGGCCCTTGCTGGCATTCTGCTGacaattgattattttttggtttcacTATGGTACATTTTACAGGTACATATCTTAAAAGAGTTCCCAGATGAACTAACATTAGTCTTGTTATACTCCATAACAGCCACCATCATATCAACAGTAGTAGCTTTGTTATCAGTTCCAAATTCAAGTGCATGGAAAATAGGACTAAATCTCTCACTCATCTCCATTGTTTCTTCTGGAATTTTCGGAAAGTTGATAGGTAATATAGTTTCTGCATGGGCAATTCACTTAAAAGGGGCTGTCTATGTAACCTCATTCAAGCCACTGCAAATTGTTATTTCTGTTTACTTGGGTGTTATATTCCTTGGTGATAGTCTTAATGTTGGAAGTATAGTTGGAGCAACAATAATCTCAATTGGTCTTTATGGTGTATTATGGGGCAAAGCAACAGAAGAGATAGAGGAAGATGTTGGTACCTTGGAGTCACCATCTACTGAGAATGCACCTTTGTTGCAAAATTATAGAACTGATCAAACTTTTGAAAAGAAAACAGATAGAAATGTTTAA 2058 0.3557 MTRRWSFYMDFLPVVVIIGFEFIDMGLLTLFKAATLQGMNNHVFIAYAYVVGTSVLLPVTLFTRRVVPPLSFSILWKSVLLGAIGCASQILGYIGINYSSPTLASAIANLVPAFTFMLAVTFRMEKLVAMSRSSNAKVIGSIVSIAGAFVLTFYKGPSIMNSSSLHQPIEFLKSVNSSWAIAGIILTADYFLLSLWYILQVHILKEFPDELTLVLLYSITATIISIVVALLSVPDASAWKIGLNLSLISIVSSGIFGKLIGNIIYAWSVHLKGAVYITSFMPFQIVISVGLGVIFLGDTLHIGSIIGATIISIGLYGVLWGKATEEIDEDVGSLESPSIENAPLLQSYRTDQTFEKKTDRNTTYVYNLGQILDEFLHIFLFMSLCRSRVVPPLRFTIICKIVLLGTIGCASQILGYISINFSSPTLASAIANLVPAFTFMLAVTFRMEKLAAKRRSSNAKVIGSIVSIAGAFVLTFYKGPSIINSSSLHQPIGFLKSVDSSWALAGILLTIDYFLVSLWYILQVHILKEFPDELTLVLLYSITATIISTVVALLSVPNSSAWKIGLNLSLISIVSSGIFGKLIGNIVSAWAIHLKGAVYVTSFKPLQIVISVYLGVIFLGDSLNVGSIVGATIISIGLYGVLWGKATEEIEEDVGTLESPSTENAPLLQNYRTDQTFEKKTDRNV 685
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu06g01917 685 SUPERFAMILY Multidrug resistance efflux transporter EmrE 50 155 - -
Tsu06g01917 685 PANTHER WAT1-RELATED PROTEIN 5 349 - -
Tsu06g01917 685 PANTHER WAT1-RELATED PROTEIN 383 671 - -
Tsu06g01917 685 PANTHER WAT1-RELATED PROTEIN 5 349 IPR030184 GO:0016021|GO:0022857
Tsu06g01917 685 PANTHER WAT1-RELATED PROTEIN 383 671 IPR030184 GO:0016021|GO:0022857
Tsu06g01917 685 SUPERFAMILY Multidrug resistance efflux transporter EmrE 379 478 - -
Tsu06g01917 685 SUPERFAMILY Multidrug resistance efflux transporter EmrE 226 322 - -
Tsu06g01917 685 Pfam EamA-like transporter family 25 152 IPR000620 GO:0016020|GO:0016021
Tsu06g01917 685 SUPERFAMILY Multidrug resistance efflux transporter EmrE 552 645 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu06g01917 Tsu-Chr6 23502875 23537297 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu06g01917 380 675 Nodulin-like Gene Family AT3G28050 49.201 3.60e-94 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu06g01917 - - mtr:MTR_6g007753 858.596